Update geneformer/emb_extractor.py (#303)
Browse files- Update geneformer/emb_extractor.py (d1f49b5321b8f1b9709ddd6b27a577f6acc0ddeb)
Co-authored-by: Han Chen <[email protected]>
geneformer/emb_extractor.py
CHANGED
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@@ -565,7 +565,7 @@ class EmbExtractor:
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filtered_input_data, cell_state, self.nproc
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)
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downsampled_data = pu.downsample_and_sort(filtered_input_data, self.max_ncells)
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model = pu.load_model(self.model_type, self.num_classes, model_directory)
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layer_to_quant = pu.quant_layers(model) + self.emb_layer
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embs = get_embs(
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model,
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filtered_input_data, cell_state, self.nproc
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)
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downsampled_data = pu.downsample_and_sort(filtered_input_data, self.max_ncells)
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model = pu.load_model(self.model_type, self.num_classes, model_directory, mode = "eval")
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layer_to_quant = pu.quant_layers(model) + self.emb_layer
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embs = get_embs(
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model,
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