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Geneformer

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Geneformer / examples

280 kB

19 contributors

History: 13 commits

Christina Theodoris

Add further explanation to tokenizer example script and updated tokenizer to match loompy raised error

78dd83b over 2 years ago

cell_classification.ipynb

95.8 kB

Subclass collator for cell classification over 2 years ago
gene_classification.ipynb

167 kB

Update gene classification example to create directory after training arguments are defined over 2 years ago
hyperparam_optimiz_for_disease_classifier.py

6.77 kB

Add example for hyperparameter optimization for disease classifier over 2 years ago
in_silico_perturbation.ipynb

3.37 kB

Add in silico perturbation example notebook. over 2 years ago
pretrain_geneformer_w_deepspeed.py

4.97 kB

Update pretrainer for transformers==4.28.0 over 2 years ago
tokenizing_scRNAseq_data.ipynb

2.86 kB

Add further explanation to tokenizer example script and updated tokenizer to match loompy raised error over 2 years ago