Update create_diffusion_dataset.py

create_diffusion_dataset.py

@@ -19,8 +19,8 @@ import tempfile
 import shutil
 
 # Global configuration
-MAX_PROTEINS_TO_PROCESS = 500
-TRUNCATE_MIDDLE_ABOVE_THIS = 200
+MAX_PROTEINS_TO_PROCESS = 1000
+TRUNCATE_MIDDLE_ABOVE_THIS = 120
 
 class ProteinDataEnricher:
     """
@@ -798,7 +798,7 @@ class ProteinNetworkConversationDataset:
                 # Show first 50 and last 20 amino acids
                 seq = enriched_data['sequence']
                 if len(seq) > TRUNCATE_MIDDLE_ABOVE_THIS:
-                    seq_preview = f"{seq[:50]}...{seq[-20:]}"
+                    seq_preview = f"{seq[:int(TRUNCATE_MIDDLE_ABOVE_THIS*0.5)]}...{seq[-int(TRUNCATE_MIDDLE_ABOVE_THIS*0.2):]}"
                 else:
                     seq_preview = seq
                 context_parts.append(f"  Sequence: {seq_preview}")