TomTBT commited on
Commit
5a9abed
·
1 Parent(s): 1088738

Faster url concatenation and archive list flattening

Browse files
Files changed (1) hide show
  1. pmc_open_access_figure.py +3 -2
pmc_open_access_figure.py CHANGED
@@ -184,10 +184,10 @@ class OpenAccessFigure(datasets.GeneratorBasedBuilder):
184
  file_list.File = file_list.File.fillna('')
185
  #mask = (~file_list.File.isin(set_article)) & (file_list.File!="")
186
  #file_list = file_list[mask]
187
- figure_url_l = [f"{_URL_ROOT}{figure_path}" for figure_path in file_list.File]
188
 
189
  try:
190
- figure_archives.extend(dl_manager.download(figure_url_l))
191
  #if l < len(incremental_file_list_l): # Only adding the incrementals to the list, the rest don't have overlap in pmid
192
  # set_article.union(file_list.File[slc_])
193
  df_l.append(file_list)
@@ -195,6 +195,7 @@ class OpenAccessFigure(datasets.GeneratorBasedBuilder):
195
  continue
196
 
197
  package_df = pd.concat(df_l).reset_index()
 
198
 
199
  return [
200
  datasets.SplitGenerator(
 
184
  file_list.File = file_list.File.fillna('')
185
  #mask = (~file_list.File.isin(set_article)) & (file_list.File!="")
186
  #file_list = file_list[mask]
187
+ figure_url_l = list(_URL_ROOT + file_list.File) #[f"{_URL_ROOT}{figure_path}" for figure_path in file_list.File]
188
 
189
  try:
190
+ figure_archives.append(dl_manager.download(figure_url_l))
191
  #if l < len(incremental_file_list_l): # Only adding the incrementals to the list, the rest don't have overlap in pmid
192
  # set_article.union(file_list.File[slc_])
193
  df_l.append(file_list)
 
195
  continue
196
 
197
  package_df = pd.concat(df_l).reset_index()
198
+ figure_archives = list(chain(*figure_archives))
199
 
200
  return [
201
  datasets.SplitGenerator(