Faster url concatenation and archive list flattening
Browse files
pmc_open_access_figure.py
CHANGED
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@@ -184,10 +184,10 @@ class OpenAccessFigure(datasets.GeneratorBasedBuilder):
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file_list.File = file_list.File.fillna('')
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#mask = (~file_list.File.isin(set_article)) & (file_list.File!="")
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#file_list = file_list[mask]
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-
figure_url_l = [f"{_URL_ROOT}{figure_path}" for figure_path in file_list.File]
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try:
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figure_archives.
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#if l < len(incremental_file_list_l): # Only adding the incrementals to the list, the rest don't have overlap in pmid
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# set_article.union(file_list.File[slc_])
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df_l.append(file_list)
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@@ -195,6 +195,7 @@ class OpenAccessFigure(datasets.GeneratorBasedBuilder):
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continue
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package_df = pd.concat(df_l).reset_index()
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return [
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datasets.SplitGenerator(
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file_list.File = file_list.File.fillna('')
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#mask = (~file_list.File.isin(set_article)) & (file_list.File!="")
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#file_list = file_list[mask]
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+
figure_url_l = list(_URL_ROOT + file_list.File) #[f"{_URL_ROOT}{figure_path}" for figure_path in file_list.File]
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try:
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+
figure_archives.append(dl_manager.download(figure_url_l))
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#if l < len(incremental_file_list_l): # Only adding the incrementals to the list, the rest don't have overlap in pmid
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# set_article.union(file_list.File[slc_])
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df_l.append(file_list)
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continue
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package_df = pd.concat(df_l).reset_index()
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+
figure_archives = list(chain(*figure_archives))
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return [
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datasets.SplitGenerator(
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