Update column descriptions for BeetleMeasurements CSV and add placeholder for sample image from group images.

README.md

@@ -72,7 +72,7 @@ Escape underscores ("_") with a "\". Example: image\_RGB
 <!-- Provide a longer summary of what this dataset is. -->
 [More Information Needed]
 
-<!--This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1), and further altered to suit Imageomics Institute needs.-->
+<!--This dataset card was generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1) and further altered to suit Imageomics Institute needs.-->
 
 
 ### Supported Tasks and Leaderboards
@@ -117,32 +117,39 @@ Describe data files
 Ex: All images are named <img_id>.png, each within a folder named for the species. They are 1024 x 1024, and the color has been standardized using <link to color standardization package>.
 -->
 
+|![picture of beetles in A00000046094](https://huggingface.co/datasets/imageomics/BeetlePalooza/resolve/main/group_images/A00000046094.jpg)| 
+|:--|
+|Image of _Carabus goryi_ beetles from sample A00000046094.|
+
+
 ### Data Fields
 [More Information Needed]
 
 **BeetleMeasurements.csv**:
-  - `PictureID`: Name of the image (`<sample-barcode>.jpg`, though sometimes it's `<NEON_sampleID_>`.jpg). Unique identifier for the 577 _group_ images, not for dataset. There are 11,104 individual beetles?
+  - `pictureID`: Name of the image (`<sample-barcode>.jpg`, though sometimes it's `<NEON_sampleID_>`.jpg). Unique identifier for the 577 _group_ images, not for dataset. There are 11,104 individual beetles. All individuals in a single image are from the same location and are the same species.
   - `scalebar`: Pixel coordinates of the ruler/scalebar in the image.
-  - `scale_dist_pix`: Integer. The length in pixels of the scalebar.
+  - `cm_pix`: Integer. The number of pixels in a centimeter on the scalebar.
   - `individual`: Integer. The beetle in the image to whom the measurements refer. Awaiting confirmation of how they are counted.
   - `structure`: Whether the measurement applies to the length or width of the elytra (`ElytraLength` or `ElytraWidth`, respectively). 
-  - `lyingstraight`: Whether or not the beetle is "straight" in the image (`Yes` or `No`). Further guidance on this term's meaning would be helpful.
+  - `lying_straight`: Whether or not the beetle is "straight" in the image (`Yes` or `No`). Further guidance on this term's meaning would be helpful.
   - `coords_pix`: Pixel coordinates of the line marking the length or width of the elytra (green or purple --confirm which is which). Note that the lines are more than one pixel wide, which is why these coordinates form a rectangle.
   - `dist_pix`: Float. The length or width of the elytra (indicated by `structure`) as measured in pixels.
-  - `dist_cm`: Float. The length or width of the elytra (indicated by `structure`) as measured in centimeters using the scalebar (the red line in the reference image denotes the pixel count for 1cm).
-  - `scientificName`: Scientific name of the specimen (`<Genus> <species>`). There are 85 different species among 36 genera. The 17 individuals in `PictureID` `MOAB_001.S.20180724.jpg` are missing the scientific name label.
-  - `NEON_sampleID_	`: NEON identifier for the sample (576 unique IDs), prefixed by the `plotID`.
+  - `dist_cm`: Float. The length or width of the elytra (indicated by `structure`) as measured in centimeters using the scalebar (`dist_pix/cm_pix`).
+  - `scientificName`: Scientific name of the specimen (`<Genus> <species>`). There are 78 different species among 36 genera, though another 10 individuals are only labeled to the genus (or subgenus) level. The 17 individuals in `PictureID` `MOAB_001.S.20180724.jpg` are missing the scientific name label (they are all the same species). These labels were provided by NEON.
+  - `NEON_sampleID`: NEON identifier for the sample (576 unique IDs), prefixed by the `plotID`.
   - `siteID`: String. Identifier for the site from which the specimens were collected. There 30 different site IDs.
-  - `field_site_name`: Name of site from which the specimens were collected. There are 43 different field site names. -- These lack consistency, and will be updated using the site codes.
+  - `site_name`: Name of field site from which the specimens were collected. There are 43 different field site names. -- These lack consistency, and will be updated using the site codes.
   - `plotID`: Identifier for the plot from which the specimens were collected (`<siteID>_<plot number>`). There are 144 different plots from which specimens were collected.
-  - `user_name`: Name of person inputting the information? (`<first><Last>`) or just their username in the system? Only 3 of them. --looks like username
-  - `workflow_id`: Integer identifier for the workflow used...?? There are 5.
-  - `genus`: Genus of the individual (generated by taking the first word in the `scientificName`).
+  - `user_name`: Zooniverse username of person annotating the elytra length and width information (there were 3 annotators).
+  - `workflowID`: Integer identifier for the workflow used...?? There are 5.
+  - `genus`: Genus of the individual (generated by taking the first word in the `scientificName`). There are 36 unique genera labeled.
+  - `species`: Species of the individual (generated from the word(s) following the `genus` in the `scientificName`). There are 78 unique species labeled.
   - `individualID`: Unique identifier for the beetles (based on the assumed uniqueness of the `PictureID`), generated from `PictureID` (minus the `.jpg`) plus `_<individual>`. There are 11,104 individuals photographed and annotated.
   - `file_name`: Relative path to image from the root of the directory (`<group_images>/<pictureID>.jpg`); allows for image to be displayed in the dataset viewer alongside its associated metadata.
 
 
 **TODO:* Make metadata file for viewer once we have segmented images too:
+
 **individual_metadata.csv**:
   - `individualID`: ID of beetle in the individual image (matches `individualID` in `BeetleMeasurements.csv`). This is a unique identifier for this CSV.
   - `pictureID`: Name of the group image (`<sample-barcode>.jpg`, though sometimes it's `<NEON_sampleID_>`.jpg). Unique identifier for the 577 _group_ images, not for dataset. (Matches `pictureID` in `BeetleMeasurements.csv`.)
@@ -154,7 +161,7 @@ Ex: All images are named <img_id>.png, each within a folder named for the specie
 
 |![Figure 1](https://huggingface.co/datasets/imageomics/BeetlePalooza/resolve/main/beetles.png)|
 |:--|
-|**Figure #.** Sample image of beetles with green and purple lines to indicate the measurement used for the elytra length and width, respectively.|
+|**Figure 1.** Sample image of beetles with green and purple lines to indicate the measurement used for the elytra length and width, respectively. The red line marks the pixels for 1cm.|
 
 
 ### Data Splits