Drug Target Binding Affinity (DTBA) Model ================================================ .. code-block:: python class DeepPurpose.models.DBTA **Drug Target Binding Affinity (DBTA)** (`Source `_) include all component, including drug encoder, target encoder and classifier/regressor. **constructor** create an instance of DBTA. .. code-block:: python __init__(self, **config) * **config** (kwargs, keyword arguments) - specify the parameter of DBTA. * **drug_encoding** (str) - Encoder mode for drug. It can be "transformer", "MPNN", "CNN", "CNN_RNN" ..., * **target_encoding** (str) - Encoder mode for protein. It can be "transformer", "CNN", "CNN_RNN" ..., * **result_folder** (str) - directory that store the learning log/results. * **concrete parameter for encoder model** (repeated) **test_** include all the test procedure. .. code-block:: python test_(self, data_generator, model, repurposing_mode = False, test = False): * **data_generator** (iterator) - iterator of torch.utils.data.DataLoader. It can be test data or validation data. * **model** (DeepPurpose.models.Classifier) - model of DBTA. * **repurposing_mode** (bool) - If repurposing_mode is True, then do repurposing. Otherwise, do compute the accuracy (including AUC score). * **test** (bool) - If test is True, plot ROC-AUC and PR-AUC curve. Otherwise, pass. **train** include all the training procedure. .. code-block:: python train(self, train, val, test = None, verbose = True) * **train** (torch.utils.data.dataloader) - Train data loader * **val** (torch.utils.data.dataloader) - Valid data loader * **test** (torch.utils.data.dataloader) - Test data loader * **verbose** (bool) - If verbose is True, then print training record every 100 iterations. **predict** include all the inference procedure. .. code-block:: python predict(self, df_data) * **df_data** (pd.DataFrame) - specify data that we need to predict. **save_model** save the well-trained model to specific directory. .. code-block:: python save_model(self, path_dir) * **path_dir** (str, a directory) - the path where model is saved. **load_pretrained** load the well-trained model so that we are able to make inference directly and don't have to train model from scratch. .. code-block:: python load_pretrained(self, path) * **path** (str, a directory) - the path where model is loaded.