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shreshth-tahoebio commited on
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Add pseudobulk DE dataset under metadata/pseudobulk_differential_expression (part 00020-of-00021)

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Files changed (27) hide show
  1. README.md +39 -23
  2. metadata/pseudobulk_differential_expression/train-01000-of-01026.parquet +3 -0
  3. metadata/pseudobulk_differential_expression/train-01001-of-01026.parquet +3 -0
  4. metadata/pseudobulk_differential_expression/train-01002-of-01026.parquet +3 -0
  5. metadata/pseudobulk_differential_expression/train-01003-of-01026.parquet +3 -0
  6. metadata/pseudobulk_differential_expression/train-01004-of-01026.parquet +3 -0
  7. metadata/pseudobulk_differential_expression/train-01005-of-01026.parquet +3 -0
  8. metadata/pseudobulk_differential_expression/train-01006-of-01026.parquet +3 -0
  9. metadata/pseudobulk_differential_expression/train-01007-of-01026.parquet +3 -0
  10. metadata/pseudobulk_differential_expression/train-01008-of-01026.parquet +3 -0
  11. metadata/pseudobulk_differential_expression/train-01009-of-01026.parquet +3 -0
  12. metadata/pseudobulk_differential_expression/train-01010-of-01026.parquet +3 -0
  13. metadata/pseudobulk_differential_expression/train-01011-of-01026.parquet +3 -0
  14. metadata/pseudobulk_differential_expression/train-01012-of-01026.parquet +3 -0
  15. metadata/pseudobulk_differential_expression/train-01013-of-01026.parquet +3 -0
  16. metadata/pseudobulk_differential_expression/train-01014-of-01026.parquet +3 -0
  17. metadata/pseudobulk_differential_expression/train-01015-of-01026.parquet +3 -0
  18. metadata/pseudobulk_differential_expression/train-01016-of-01026.parquet +3 -0
  19. metadata/pseudobulk_differential_expression/train-01017-of-01026.parquet +3 -0
  20. metadata/pseudobulk_differential_expression/train-01018-of-01026.parquet +3 -0
  21. metadata/pseudobulk_differential_expression/train-01019-of-01026.parquet +3 -0
  22. metadata/pseudobulk_differential_expression/train-01020-of-01026.parquet +3 -0
  23. metadata/pseudobulk_differential_expression/train-01021-of-01026.parquet +3 -0
  24. metadata/pseudobulk_differential_expression/train-01022-of-01026.parquet +3 -0
  25. metadata/pseudobulk_differential_expression/train-01023-of-01026.parquet +3 -0
  26. metadata/pseudobulk_differential_expression/train-01024-of-01026.parquet +3 -0
  27. metadata/pseudobulk_differential_expression/train-01025-of-01026.parquet +3 -0
README.md CHANGED
@@ -8,47 +8,63 @@ tags:
8
  size_categories:
9
  - 100M<n<1B
10
  configs:
 
 
 
 
 
 
 
 
11
  - config_name: expression_data
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  data_files: data/train-*
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  default: true
14
- - config_name: sample_metadata
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- data_files: metadata/sample_metadata.parquet
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  - config_name: gene_metadata
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  data_files: metadata/gene_metadata.parquet
18
- - config_name: drug_metadata
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- data_files: metadata/drug_metadata.parquet
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- - config_name: cell_line_metadata
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- data_files: metadata/cell_line_metadata.parquet
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  - config_name: obs_metadata
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  data_files: metadata/obs_metadata.parquet
 
 
24
  dataset_info:
25
  features:
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- - name: genes
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- sequence: int64
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- - name: expressions
29
- sequence: float32
30
- - name: drug
31
  dtype: string
32
- - name: sample
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- dtype: string
34
- - name: BARCODE_SUB_LIB_ID
 
 
 
 
 
 
 
 
 
 
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  dtype: string
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- - name: cell_line_id
 
 
 
 
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  dtype: string
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- - name: moa-fine
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  dtype: string
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- - name: canonical_smiles
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  dtype: string
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- - name: pubchem_cid
 
 
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  dtype: string
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- - name: plate
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  dtype: string
46
  splits:
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  - name: train
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- num_bytes: 1693653078843
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- num_examples: 95624334
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- download_size: 337644770670
51
- dataset_size: 1693653078843
52
  ---
53
 
54
  # Tahoe-100M
 
8
  size_categories:
9
  - 100M<n<1B
10
  configs:
11
+ - config_name: cell_line_metadata
12
+ data_files: metadata/cell_line_metadata.parquet
13
+ - config_name: default
14
+ data_files:
15
+ - split: train
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+ path: metadata/pseudobulk_differential_expression/train-*
17
+ - config_name: drug_metadata
18
+ data_files: metadata/drug_metadata.parquet
19
  - config_name: expression_data
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  data_files: data/train-*
21
  default: true
 
 
22
  - config_name: gene_metadata
23
  data_files: metadata/gene_metadata.parquet
 
 
 
 
24
  - config_name: obs_metadata
25
  data_files: metadata/obs_metadata.parquet
26
+ - config_name: sample_metadata
27
+ data_files: metadata/sample_metadata.parquet
28
  dataset_info:
29
  features:
30
+ - name: gene_name
 
 
 
 
31
  dtype: string
32
+ - name: baseMean
33
+ dtype: float32
34
+ - name: log2FoldChange
35
+ dtype: float32
36
+ - name: lfcSE
37
+ dtype: float32
38
+ - name: stat
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+ dtype: float32
40
+ - name: pvalue
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+ dtype: float32
42
+ - name: padj
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+ dtype: float32
44
+ - name: plate
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  dtype: string
46
+ - name: n_cells_trt
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+ dtype: int64
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+ - name: n_cells_ctrl
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+ dtype: int64
50
+ - name: Cell_ID_Cellosaur
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  dtype: string
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+ - name: Cell_ID_DepMap
53
  dtype: string
54
+ - name: drug
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  dtype: string
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+ - name: concentration
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+ dtype: float32
58
+ - name: concentration_unit
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  dtype: string
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+ - name: Cell_Name_Vevo
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  dtype: string
62
  splits:
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  - name: train
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+ num_bytes: 512588869802
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+ num_examples: 4089820780
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+ download_size: 88859715303
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+ dataset_size: 512588869802
68
  ---
69
 
70
  # Tahoe-100M
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