Upload 17 files
Browse filesadded input and output samples
- demofolder/data/DLCS24/DLCS_0001.nii.gz +3 -0
- demofolder/data/DLCS24/DLCS_0002.nii.gz +3 -0
- demofolder/data/DLCSD24_Annotations_N2.csv +4 -0
- demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.csv +4 -0
- demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.log +50 -0
- demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z_Error.csv +1 -0
- demofolder/output/DLCS24_64Q_CAD_patches/nifti/DLCS_0001_01.nii.gz +3 -0
- demofolder/output/DLCS24_64Q_CAD_patches/nifti/DLCS_0001_02.nii.gz +3 -0
- demofolder/output/DLCS24_64Q_CAD_patches/nifti/DLCS_0002_01.nii.gz +3 -0
- demofolder/output/DLCS24_KNN_2mm_Extend_RadiomicsSeg/DLCS_0001_01.nii.gz +3 -0
- demofolder/output/DLCS24_KNN_2mm_Extend_RadiomicsSeg/DLCS_0001_02.nii.gz +3 -0
- demofolder/output/DLCS24_KNN_2mm_Extend_RadiomicsSeg/DLCS_0002_01.nii.gz +3 -0
- demofolder/output/DLCS24_KNN_2mm_Extend_Seg/DLCS_0001_mask.nii.gz +3 -0
- demofolder/output/DLCS24_KNN_2mm_Extend_Seg/DLCS_0002_mask.nii.gz +3 -0
- demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.csv +4 -0
- demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.log +159 -0
- demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm_Error.csv +1 -0
demofolder/data/DLCS24/DLCS_0001.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:000cfd04b45e49e360abb43a6dc71cd83209c710f74bd885a8c68ec385dba8e0
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size 163278991
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demofolder/data/DLCS24/DLCS_0002.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:eb2ed140cf1b72d68b486629b60cbd9227a83d92df267d5add4ee89655cff079
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size 174974870
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demofolder/data/DLCSD24_Annotations_N2.csv
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patient-id,nodule_id,ct_nifti_file,coordX,coordY,coordZ,w,h,d,Malignant_lbl,benchmark_split
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DLCS_0001,DLCS_0001_01,DLCS_0001.nii.gz,-106.552734375,-63.837890625,-211.6771850585937,4.39453125,4.39453125,4.296875,0,train
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DLCS_0001,DLCS_0001_02,DLCS_0001.nii.gz,88.6962890625,39.4775390625,-126.09124755859376,6.240234375,6.240234375,6.25,0,train
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DLCS_0002,DLCS_0002_01,DLCS_0002.nii.gz,-29.0390625,-129.443359375,-159.28436279296875,4.74609375,4.921875,4.84375,0,train
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demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.csv
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ct_nifti_file,candidateID,Malignant_lbl,coordX,coordY,coordZ
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DLCS_0001.nii.gz,DLCS_0001_01,0,-106.552734375,-63.837890625,-211.6771850585937
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DLCS_0001.nii.gz,DLCS_0001_02,0,88.6962890625,39.4775390625,-126.09124755859376
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DLCS_0002.nii.gz,DLCS_0002_01,0,-29.0390625,-129.443359375,-159.28436279296875
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demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.log
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2025-09-21 08:23:19 - INFO - Output CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.csv
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2025-09-21 08:23:19 - INFO - Error CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z_Error.csv
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2025-09-21 08:23:19 - INFO - Log File Created: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.log
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2025-09-21 08:23:19 - INFO - File names generated successfully.
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2025-09-21 08:23:19 - INFO - ---Loading---: 1
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2025-09-21 08:23:19 - INFO - Loading the Image:DLCS_0001.nii.gz
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2025-09-21 08:23:19 - INFO - Number of Annotations:2
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2025-09-21 08:23:22 - INFO - ---Loading---: 2
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2025-09-21 08:23:22 - INFO - Loading the Image:DLCS_0002.nii.gz
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2025-09-21 08:23:22 - INFO - Number of Annotations:1
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2025-09-21 08:45:12 - INFO - Output CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.csv
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2025-09-21 08:45:12 - INFO - Error CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z_Error.csv
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2025-09-21 08:45:12 - INFO - Log File Created: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.log
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2025-09-21 08:45:12 - INFO - File names generated successfully.
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2025-09-21 08:45:12 - INFO - ---Loading---: 1
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2025-09-21 08:45:12 - INFO - Loading the Image:DLCS_0001.nii.gz
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2025-09-21 08:45:12 - INFO - Number of Annotations:2
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2025-09-21 08:45:15 - INFO - ---Loading---: 2
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2025-09-21 08:45:15 - INFO - Loading the Image:DLCS_0002.nii.gz
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2025-09-21 08:45:15 - INFO - Number of Annotations:1
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2025-09-21 14:51:26 - INFO - Output CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.csv
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2025-09-21 14:51:26 - INFO - Error CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z_Error.csv
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2025-09-21 14:51:26 - INFO - Log File Created: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.log
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2025-09-21 14:51:26 - INFO - File names generated successfully.
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2025-09-21 14:51:26 - INFO - ---Loading---: 1
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2025-09-21 14:51:26 - INFO - Loading the Image:DLCS_0001.nii.gz
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2025-09-21 14:51:26 - INFO - Number of Annotations:2
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2025-09-21 14:51:28 - INFO - ---Loading---: 2
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2025-09-21 14:51:28 - INFO - Loading the Image:DLCS_0002.nii.gz
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2025-09-21 14:51:28 - INFO - Number of Annotations:1
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2025-09-21 16:13:45 - INFO - Output CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.csv
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2025-09-21 16:13:45 - INFO - Error CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z_Error.csv
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2025-09-21 16:13:45 - INFO - Log File Created: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.log
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2025-09-21 16:13:45 - INFO - File names generated successfully.
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2025-09-21 16:13:45 - INFO - ---Loading---: 1
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2025-09-21 16:13:45 - INFO - Loading the Image:DLCS_0001.nii.gz
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2025-09-21 16:13:45 - INFO - Number of Annotations:2
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2025-09-21 16:13:47 - INFO - ---Loading---: 2
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2025-09-21 16:13:47 - INFO - Loading the Image:DLCS_0002.nii.gz
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2025-09-21 16:13:47 - INFO - Number of Annotations:1
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2025-09-21 19:05:10 - INFO - Output CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.csv
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2025-09-21 19:05:10 - INFO - Error CSV File: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z_Error.csv
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2025-09-21 19:05:10 - INFO - Log File Created: /app/demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z.log
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2025-09-21 19:05:10 - INFO - File names generated successfully.
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2025-09-21 19:05:10 - INFO - ---Loading---: 1
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2025-09-21 19:05:10 - INFO - Loading the Image:DLCS_0001.nii.gz
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2025-09-21 19:05:10 - INFO - Number of Annotations:2
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2025-09-21 19:05:12 - INFO - ---Loading---: 2
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2025-09-21 19:05:12 - INFO - Loading the Image:DLCS_0002.nii.gz
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2025-09-21 19:05:12 - INFO - Number of Annotations:1
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demofolder/output/DLCS24_64Q_CAD_patches/CandidateSeg_DLCSD24_patch64x64y64z_Error.csv
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ct_nifti_file
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demofolder/output/DLCS24_64Q_CAD_patches/nifti/DLCS_0001_01.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:c5cde5dd0c96233facd2917be8c2c76da54d0ce804302d3a92c5e7f1f0d0ad0a
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size 443926
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demofolder/output/DLCS24_64Q_CAD_patches/nifti/DLCS_0001_02.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:e1df95477aeb16093e065b208e8dd2ceaef8f718ae85b59cedec13255b421653
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size 436552
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demofolder/output/DLCS24_64Q_CAD_patches/nifti/DLCS_0002_01.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:152f72c141b7c23eb94bb960afab418e05fd84098a3e251e41061d4a6d35c1dd
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size 466008
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demofolder/output/DLCS24_KNN_2mm_Extend_RadiomicsSeg/DLCS_0001_01.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:fefc2202d4c4487945ecca1aa88c9814be02ea12e8d827d7ac6563207300aaf4
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size 145232
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demofolder/output/DLCS24_KNN_2mm_Extend_RadiomicsSeg/DLCS_0001_02.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:af50ba4c8fab816f29c1667c3359626537971e51139f2a0c4f57a5dc512a09c0
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size 145430
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demofolder/output/DLCS24_KNN_2mm_Extend_RadiomicsSeg/DLCS_0002_01.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:50084e964263391492028cee2bbce70387ee5f4d6f6dc1bc5178e38ffd18a9bd
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size 145799
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demofolder/output/DLCS24_KNN_2mm_Extend_Seg/DLCS_0001_mask.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:e5400fcb1e8d9e1c30f78638101ae7dc0764c78f0ae615c907215b722bb7650b
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size 145806
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demofolder/output/DLCS24_KNN_2mm_Extend_Seg/DLCS_0002_mask.nii.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:50084e964263391492028cee2bbce70387ee5f4d6f6dc1bc5178e38ffd18a9bd
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size 145799
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demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.csv
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diagnostics_Versions_PyRadiomics,diagnostics_Versions_Numpy,diagnostics_Versions_SimpleITK,diagnostics_Versions_PyWavelet,diagnostics_Versions_Python,diagnostics_Configuration_Settings,diagnostics_Configuration_EnabledImageTypes,diagnostics_Image-original_Hash,diagnostics_Image-original_Dimensionality,diagnostics_Image-original_Spacing,diagnostics_Image-original_Size,diagnostics_Image-original_Mean,diagnostics_Image-original_Minimum,diagnostics_Image-original_Maximum,diagnostics_Mask-original_Hash,diagnostics_Mask-original_Spacing,diagnostics_Mask-original_Size,diagnostics_Mask-original_BoundingBox,diagnostics_Mask-original_VoxelNum,diagnostics_Mask-original_VolumeNum,diagnostics_Mask-original_CenterOfMassIndex,diagnostics_Mask-original_CenterOfMass,diagnostics_Image-interpolated_Spacing,diagnostics_Image-interpolated_Size,diagnostics_Image-interpolated_Mean,diagnostics_Image-interpolated_Minimum,diagnostics_Image-interpolated_Maximum,diagnostics_Mask-interpolated_Spacing,diagnostics_Mask-interpolated_Size,diagnostics_Mask-interpolated_BoundingBox,diagnostics_Mask-interpolated_VoxelNum,diagnostics_Mask-interpolated_VolumeNum,diagnostics_Mask-interpolated_CenterOfMassIndex,diagnostics_Mask-interpolated_CenterOfMass,diagnostics_Mask-interpolated_Mean,diagnostics_Mask-interpolated_Minimum,diagnostics_Mask-interpolated_Maximum,original_shape_Elongation,original_shape_Flatness,original_shape_LeastAxisLength,original_shape_MajorAxisLength,original_shape_Maximum2DDiameterColumn,original_shape_Maximum2DDiameterRow,original_shape_Maximum2DDiameterSlice,original_shape_Maximum3DDiameter,original_shape_MeshVolume,original_shape_MinorAxisLength,original_shape_Sphericity,original_shape_SurfaceArea,original_shape_SurfaceVolumeRatio,original_shape_VoxelVolume,original_firstorder_10Percentile,original_firstorder_90Percentile,original_firstorder_Energy,original_firstorder_Entropy,original_firstorder_InterquartileRange,original_firstorder_Kurtosis,original_firstorder_Maximum,original_firstorder_MeanAbsoluteDeviation,original_firstorder_Mean,original_firstorder_Median,original_firstorder_Minimum,original_firstorder_Range,original_firstorder_RobustMeanAbsoluteDeviation,original_firstorder_RootMeanSquared,original_firstorder_Skewness,original_firstorder_TotalEnergy,original_firstorder_Uniformity,original_firstorder_Variance,original_glcm_Autocorrelation,original_glcm_ClusterProminence,original_glcm_ClusterShade,original_glcm_ClusterTendency,original_glcm_Contrast,original_glcm_Correlation,original_glcm_DifferenceAverage,original_glcm_DifferenceEntropy,original_glcm_DifferenceVariance,original_glcm_Id,original_glcm_Idm,original_glcm_Idmn,original_glcm_Idn,original_glcm_Imc1,original_glcm_Imc2,original_glcm_InverseVariance,original_glcm_JointAverage,original_glcm_JointEnergy,original_glcm_JointEntropy,original_glcm_MCC,original_glcm_MaximumProbability,original_glcm_SumAverage,original_glcm_SumEntropy,original_glcm_SumSquares,original_gldm_DependenceEntropy,original_gldm_DependenceNonUniformity,original_gldm_DependenceNonUniformityNormalized,original_gldm_DependenceVariance,original_gldm_GrayLevelNonUniformity,original_gldm_GrayLevelVariance,original_gldm_HighGrayLevelEmphasis,original_gldm_LargeDependenceEmphasis,original_gldm_LargeDependenceHighGrayLevelEmphasis,original_gldm_LargeDependenceLowGrayLevelEmphasis,original_gldm_LowGrayLevelEmphasis,original_gldm_SmallDependenceEmphasis,original_gldm_SmallDependenceHighGrayLevelEmphasis,original_gldm_SmallDependenceLowGrayLevelEmphasis,original_glrlm_GrayLevelNonUniformity,original_glrlm_GrayLevelNonUniformityNormalized,original_glrlm_GrayLevelVariance,original_glrlm_HighGrayLevelRunEmphasis,original_glrlm_LongRunEmphasis,original_glrlm_LongRunHighGrayLevelEmphasis,original_glrlm_LongRunLowGrayLevelEmphasis,original_glrlm_LowGrayLevelRunEmphasis,original_glrlm_RunEntropy,original_glrlm_RunLengthNonUniformity,original_glrlm_RunLengthNonUniformityNormalized,original_glrlm_RunPercentage,original_glrlm_RunVariance,original_glrlm_ShortRunEmphasis,original_glrlm_ShortRunHighGrayLevelEmphasis,original_glrlm_ShortRunLowGrayLevelEmphasis,original_glszm_GrayLevelNonUniformity,original_glszm_GrayLevelNonUniformityNormalized,original_glszm_GrayLevelVariance,original_glszm_HighGrayLevelZoneEmphasis,original_glszm_LargeAreaEmphasis,original_glszm_LargeAreaHighGrayLevelEmphasis,original_glszm_LargeAreaLowGrayLevelEmphasis,original_glszm_LowGrayLevelZoneEmphasis,original_glszm_SizeZoneNonUniformity,original_glszm_SizeZoneNonUniformityNormalized,original_glszm_SmallAreaEmphasis,original_glszm_SmallAreaHighGrayLevelEmphasis,original_glszm_SmallAreaLowGrayLevelEmphasis,original_glszm_ZoneEntropy,original_glszm_ZonePercentage,original_glszm_ZoneVariance,original_ngtdm_Busyness,original_ngtdm_Coarseness,original_ngtdm_Complexity,original_ngtdm_Contrast,original_ngtdm_Strength,ct_nifti_file,candidateID,Malignant_lbl,coordX,coordY,coordZ,w,h,d
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| 2 |
+
v3.1.0,1.24.4,2.5.2,1.6.0,3.9.23,"{'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': [1, 1, 1], 'interpolator': 23, 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True, 'binWidth': 25, 'labelInterpolator': 1}",{'Original': {}},d4e7bb0455666c0b3a267b95af74e91447fd8812,3D,"(0.78125, 0.78125, 0.625)","(512, 512, 568)",-941.5182921785704,-3024.0,3071.0,883aeb89a7a800bf69eb27b5a762c65a3d158fc0,"(0.78125, 0.78125, 0.625)","(512, 512, 568)","(114, 331, 196, 14, 12, 14)",1890,1,"(120.21481481481482, 336.76560846560847, 202.4904761904762)","(-106.08217592592592, -63.87938161375661, -211.87844993954613)","(1.0, 1.0, 1.0)","(23, 21, 20)",-854.0982401656315,-1018.0,576.0,"(1.0, 1.0, 1.0)","(23, 21, 20)","(6, 6, 5, 11, 9, 9)",728,1,"(10.788461538461538, 10.067307692307692, 9.25412087912088)","(-106.10216346153847, -63.957932692307665, -211.99337667947287)",-800.9642857142857,-985.0,-21.0,0.8092203110860188,0.75670038853897,9.09314192305121,12.016832633862078,13.601470508735444,11.40175425099138,12.529964086141668,14.866068747318506,715.125,9.724265042242493,0.8556967932070418,451.9449388128816,0.6319803374415405,728.0,-912.0,-616.0999999999998,488479982.0,3.7204551081011292,89.0,9.568661579505745,-21.0,112.12235086342233,-800.9642857142857,-860.0,-985.0,964.0,47.890158257548784,819.139173928177,2.567519374124505,488479982.0,0.12214330998671658,29445.19927394034,118.08782940709222,256554.3933442712,5391.983991718377,179.41348881007906,43.903265428193585,0.6129382348441319,4.060413238909895,3.4680684561179476,26.6764805947839,0.4044956765864362,0.3381013715158216,0.976615936617673,0.9184315153002591,-0.20783206403270074,0.8930420182780101,0.3187836544246052,9.173286821398177,0.01797041199438254,6.980415913034832,0.661010644271832,0.05313734311843838,18.346573642796365,4.74686777351248,55.82918855956815,6.25505166184471,86.0467032967033,0.11819602101195507,6.8956949643762835,88.92032967032966,47.02039118162058,118.59478021978022,25.546703296703296,1475.8145604395604,0.9095809356694216,0.03368637953217264,0.22458535444042216,55.078339488508014,0.006740981211110945,70.51574275888518,0.11087789761837627,50.003125854406555,126.80480702687372,1.5011276937607059,156.94541374834327,0.05126090248871809,0.03337921187426619,4.391394049797443,494.7396646927016,0.7759953321297512,0.8723584108199494,0.1773322822650623,0.9016159844429315,120.13157845230445,0.02985871515026286,7.978021978021978,0.043835285593527354,81.69653423499578,258.7912087912088,239.0989010989011,8183.346153846154,8.270344282955547,0.029715472250100867,74.27472527472527,0.4081028861248642,0.6626729871666382,194.55607951987778,0.019520707430390846,6.075160489760685,0.25,223.0989010989011,0.3818668061127623,0.008000301664488197,1666.494622930756,0.14451961600076796,14.619698635660178,DLCS_0001.nii.gz,DLCS_0001_01,0,-106.552734375,-63.837890625,-211.6771850585937,4.39453125,4.39453125,4.296875
|
| 3 |
+
v3.1.0,1.24.4,2.5.2,1.6.0,3.9.23,"{'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': [1, 1, 1], 'interpolator': 23, 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True, 'binWidth': 25, 'labelInterpolator': 1}",{'Original': {}},d4e7bb0455666c0b3a267b95af74e91447fd8812,3D,"(0.78125, 0.78125, 0.625)","(512, 512, 568)",-941.5182921785704,-3024.0,3071.0,4f9b01c18f8f0f8603481c2e50e78f44dba7b4b1,"(0.78125, 0.78125, 0.625)","(512, 512, 568)","(361, 198, 332, 19, 16, 18)",3465,1,"(369.8150072150072, 205.0005772005772, 339.8917748917749)","(88.91797438672438, 39.062049062049056, -126.00263825123443)","(1.0, 1.0, 1.0)","(27, 24, 23)",-823.308910359635,-1051.0,103.0,"(1.0, 1.0, 1.0)","(27, 24, 23)","(6, 6, 5, 15, 12, 12)",1362,1,"(12.845814977973568, 11.04258443465492, 10.180616740088105)","(88.9551899779735, 39.06679056534508, -126.06688081850564)",-763.007342143906,-1029.0,103.0,0.8669758581831777,0.6988653637344449,10.344328471709158,14.801604155102755,17.0,15.620499351813308,16.55294535724685,18.384776310850235,1345.9583333333333,12.8326334648579,0.8404078733326186,701.4796703091209,0.521174878104786,1362.0,-934.0,-455.0,855507882.0,4.480485422007737,174.0,6.073943611502014,103.0,154.534652547325,-763.007342143906,-839.0,-1029.0,1132.0,85.68317030954394,792.5441301516815,1.8552569691655267,855507882.0,0.06539898784071968,45945.994072377805,216.66359591971917,421760.18522604764,7800.353858753591,277.4954373490572,56.16000504228992,0.6671859917012904,5.043313070413481,3.793662509854429,29.396689781044532,0.3264647016656709,0.24532857655965928,0.9775451770303406,0.9118886155372479,-0.1866332503085878,0.9016460594183737,0.24971102049833271,12.699466885238449,0.005884864657806331,8.36065945594895,0.7042149554620322,0.02146534524527752,25.3989337704769,5.4746279818651296,83.41386059783682,6.764229693879326,233.90308370044053,0.17173501005906058,3.5232242469720396,89.07342143906021,73.67902702038336,217.41483113069017,13.425844346549193,1485.6409691629956,0.30387919429097854,0.019866420430348423,0.30884909434974667,97.0930692090516,0.005821423174517074,77.59617451152707,0.06208516867478848,75.83775766700514,225.66663025009635,1.29169081321698,261.5209898133078,0.02610366722166646,0.019653614951742487,4.9355369357178365,1062.1582068399648,0.84915373162217,0.9174291200722919,0.10136520856744899,0.9374038727204402,217.4849072208673,0.018256349295258642,17.84937238493724,0.03734178323208627,90.42537770697291,331.25941422594144,52.82845188284519,3898.3912133891213,1.152960380947072,0.01823637852228777,197.6192468619247,0.41342938674042823,0.6683610334145277,228.12838743421435,0.012893017715710189,6.530607515855542,0.3509544787077827,44.709528894802254,0.3815921854069532,0.005568348153499481,2843.703390639734,0.1946741847886258,9.483338482457237,DLCS_0001.nii.gz,DLCS_0001_02,0,88.6962890625,39.4775390625,-126.09124755859376,6.240234375,6.240234375,6.25
|
| 4 |
+
v3.1.0,1.24.4,2.5.2,1.6.0,3.9.23,"{'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': [1, 1, 1], 'interpolator': 23, 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True, 'binWidth': 25, 'labelInterpolator': 1}",{'Original': {}},01534b29103783e787f2736767cde255f1101759,3D,"(0.70703125, 0.70703125, 0.6000000238418579)","(512, 512, 569)",-514.2964016423284,-1024.0,1907.0,010abcbf86c6aee7b88207e92b15f3629e54b828,"(0.70703125, 0.70703125, 0.6000000238418579)","(512, 512, 569)","(207, 170, 292, 20, 18, 21)",3923,1,"(216.3497323476931, 179.44022431812388, 301.31633953606934)","(-29.680462676045096, -129.2233617249235, -159.5101768873858)","(1.0, 1.0, 1.0)","(26, 25, 25)",-760.0574153846154,-1010.0,847.0,"(1.0, 1.0, 1.0)","(26, 25, 25)","(5, 6, 6, 14, 13, 13)",1223,1,"(11.671300081766148, 12.734260016353229, 11.575633687653312)","(-29.828699918233852, -129.23426001635323, -159.52435411723638)",-751.9607522485691,-951.0,15.0,0.7332852597893985,0.6041234449553685,9.866622929213763,16.33213048029065,17.204650534085253,15.811388300841896,16.97056274847714,20.322401432901575,1205.375,11.976110542154284,0.7753139251224865,706.4606774235983,0.586092027313988,1223.0,-873.0,-545.4000000000001,720330726.0,4.043654428449454,122.0,7.984841344071988,15.0,106.39444578529935,-751.9607522485691,-801.0,-951.0,966.0,56.67032242275418,767.4546849012924,2.1355795103629496,720330726.0,0.0876502361056047,23541.720454708044,116.70752745057372,84530.8634314573,2182.601762251843,118.61693669059329,46.408027953047345,0.4405134915506347,4.430840415909027,3.639568014028979,26.24042280829663,0.3553714547391959,0.27659750699736024,0.9753229715140281,0.9103893460517327,-0.14135665879249337,0.8275571521625396,0.2741963977202511,9.931362023057385,0.009022832462158825,7.737240947429831,0.5247982569179419,0.03134404302492602,19.862724046114767,4.981165747105749,41.256241160910136,6.480064973495557,191.1062959934587,0.1562602583756817,3.851465071547051,107.19623875715453,37.62815322829203,127.01798855273917,15.865085854456256,1034.8953393295176,0.4228157303545748,0.025695004501423674,0.2552102285891395,57.61338923710402,0.006968883011511846,92.00595228014132,0.08309830695921286,39.61621375197818,132.83076757265704,1.3427785122351492,156.9554277609059,0.034703553314778965,0.025641867990701436,4.556568264120608,918.6174460595822,0.8292287941068157,0.9051512673753067,0.12062113582556454,0.9283610724349096,127.56418682456993,0.023784545141417163,14.632530120481928,0.04407388590506605,67.4511812309479,241.2620481927711,148.6475903614458,6803.364457831325,4.016797880162429,0.02640045715413216,134.18072289156626,0.4041588038902598,0.6595335276510879,178.99050758595496,0.019059703615147836,6.312462405318371,0.2714636140637776,135.07768725504428,0.5347522447623861,0.004959880164483956,2013.2038175271214,0.13440301752497194,6.711599755012405,DLCS_0002.nii.gz,DLCS_0002_01,0,-29.0390625,-129.443359375,-159.28436279296875,4.74609375,4.921875,4.84375
|
demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.log
ADDED
|
@@ -0,0 +1,159 @@
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| 1 |
+
2025-09-21 14:47:42 - INFO - Output CSV File: /app/demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.csv
|
| 2 |
+
2025-09-21 14:47:42 - INFO - Error CSV File: /app/demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm_Error.csv
|
| 3 |
+
2025-09-21 14:47:42 - INFO - Log File Created: /app/demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.log
|
| 4 |
+
2025-09-21 14:47:42 - INFO - File names generated successfully.
|
| 5 |
+
2025-09-21 14:47:42 - INFO - No valid config parameter, using defaults: {'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': None, 'interpolator': 'sitkBSpline', 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True}
|
| 6 |
+
2025-09-21 14:47:42 - INFO - Enabled image types: {'Original': {}}
|
| 7 |
+
2025-09-21 14:47:42 - INFO - Enabled features: {'firstorder': [], 'glcm': [], 'gldm': [], 'glrlm': [], 'glszm': [], 'ngtdm': [], 'shape': []}
|
| 8 |
+
2025-09-21 14:47:42 - INFO - Applying custom setting overrides: {'binWidth': 25, 'resampledPixelSpacing': [1, 1, 1], 'interpolator': 23, 'labelInterpolator': 1}
|
| 9 |
+
2025-09-21 14:47:42 - INFO - ---Loading---: 1
|
| 10 |
+
2025-09-21 14:47:42 - INFO - Loading the Image:DLCS_0001.nii.gz
|
| 11 |
+
2025-09-21 14:47:42 - INFO - Number of Annotations:2
|
| 12 |
+
2025-09-21 14:47:46 - INFO - Calculating features with label: 1
|
| 13 |
+
2025-09-21 14:47:46 - INFO - Loading image and mask
|
| 14 |
+
2025-09-21 14:47:59 - INFO - Applying resampling from spacing [0.78125 0.78125 0.625 ] and size [512 512 568] to spacing [1. 1. 1.] and size [23, 21, 20]
|
| 15 |
+
2025-09-21 14:48:09 - INFO - Computing shape
|
| 16 |
+
2025-09-21 14:48:09 - INFO - Adding image type "Original" with custom settings: {}
|
| 17 |
+
2025-09-21 14:48:09 - INFO - Calculating features for original image
|
| 18 |
+
2025-09-21 14:48:09 - INFO - Computing firstorder
|
| 19 |
+
2025-09-21 14:48:09 - INFO - Computing glcm
|
| 20 |
+
2025-09-21 14:48:09 - WARNING - GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
|
| 21 |
+
2025-09-21 14:48:09 - INFO - Computing gldm
|
| 22 |
+
2025-09-21 14:48:09 - INFO - Computing glrlm
|
| 23 |
+
2025-09-21 14:48:09 - INFO - Computing glszm
|
| 24 |
+
2025-09-21 14:48:09 - INFO - Computing ngtdm
|
| 25 |
+
2025-09-21 14:48:10 - INFO - Calculating features with label: 1
|
| 26 |
+
2025-09-21 14:48:10 - INFO - Loading image and mask
|
| 27 |
+
2025-09-21 14:48:23 - INFO - Applying resampling from spacing [0.78125 0.78125 0.625 ] and size [512 512 568] to spacing [1. 1. 1.] and size [27, 24, 23]
|
| 28 |
+
2025-09-21 14:48:32 - INFO - Computing shape
|
| 29 |
+
2025-09-21 14:48:32 - INFO - Adding image type "Original" with custom settings: {}
|
| 30 |
+
2025-09-21 14:48:32 - INFO - Calculating features for original image
|
| 31 |
+
2025-09-21 14:48:32 - INFO - Computing firstorder
|
| 32 |
+
2025-09-21 14:48:32 - INFO - Computing glcm
|
| 33 |
+
2025-09-21 14:48:32 - WARNING - GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
|
| 34 |
+
2025-09-21 14:48:32 - INFO - Computing gldm
|
| 35 |
+
2025-09-21 14:48:32 - INFO - Computing glrlm
|
| 36 |
+
2025-09-21 14:48:32 - INFO - Computing glszm
|
| 37 |
+
2025-09-21 14:48:32 - INFO - Computing ngtdm
|
| 38 |
+
2025-09-21 14:48:32 - INFO - ---Loading---: 2
|
| 39 |
+
2025-09-21 14:48:32 - INFO - Loading the Image:DLCS_0002.nii.gz
|
| 40 |
+
2025-09-21 14:48:32 - INFO - Number of Annotations:1
|
| 41 |
+
2025-09-21 14:48:35 - INFO - Calculating features with label: 1
|
| 42 |
+
2025-09-21 14:48:35 - INFO - Loading image and mask
|
| 43 |
+
2025-09-21 14:48:47 - INFO - Applying resampling from spacing [0.70703125 0.70703125 0.60000002] and size [512 512 569] to spacing [1. 1. 1.] and size [26, 25, 25]
|
| 44 |
+
2025-09-21 14:48:56 - INFO - Computing shape
|
| 45 |
+
2025-09-21 14:48:56 - INFO - Adding image type "Original" with custom settings: {}
|
| 46 |
+
2025-09-21 14:48:56 - INFO - Calculating features for original image
|
| 47 |
+
2025-09-21 14:48:56 - INFO - Computing firstorder
|
| 48 |
+
2025-09-21 14:48:56 - INFO - Computing glcm
|
| 49 |
+
2025-09-21 14:48:57 - WARNING - GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
|
| 50 |
+
2025-09-21 14:48:57 - INFO - Computing gldm
|
| 51 |
+
2025-09-21 14:48:57 - INFO - Computing glrlm
|
| 52 |
+
2025-09-21 14:48:57 - INFO - Computing glszm
|
| 53 |
+
2025-09-21 14:48:57 - INFO - Computing ngtdm
|
| 54 |
+
2025-09-21 15:57:54 - INFO - Output CSV File: /app/demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.csv
|
| 55 |
+
2025-09-21 15:57:54 - INFO - Error CSV File: /app/demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm_Error.csv
|
| 56 |
+
2025-09-21 15:57:54 - INFO - Log File Created: /app/demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.log
|
| 57 |
+
2025-09-21 15:57:54 - INFO - File names generated successfully.
|
| 58 |
+
2025-09-21 15:57:54 - INFO - No valid config parameter, using defaults: {'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': None, 'interpolator': 'sitkBSpline', 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True}
|
| 59 |
+
2025-09-21 15:57:54 - INFO - Enabled image types: {'Original': {}}
|
| 60 |
+
2025-09-21 15:57:54 - INFO - Enabled features: {'firstorder': [], 'glcm': [], 'gldm': [], 'glrlm': [], 'glszm': [], 'ngtdm': [], 'shape': []}
|
| 61 |
+
2025-09-21 15:57:54 - INFO - Applying custom setting overrides: {'binWidth': 25, 'resampledPixelSpacing': [1, 1, 1], 'interpolator': 23, 'labelInterpolator': 1}
|
| 62 |
+
2025-09-21 15:57:54 - INFO - ---Loading---: 1
|
| 63 |
+
2025-09-21 15:57:54 - INFO - Loading the Image:DLCS_0001.nii.gz
|
| 64 |
+
2025-09-21 15:57:54 - INFO - Number of Annotations:2
|
| 65 |
+
2025-09-21 15:57:58 - INFO - Calculating features with label: 1
|
| 66 |
+
2025-09-21 15:57:58 - INFO - Loading image and mask
|
| 67 |
+
2025-09-21 15:58:09 - INFO - Applying resampling from spacing [0.78125 0.78125 0.625 ] and size [512 512 568] to spacing [1. 1. 1.] and size [23, 21, 20]
|
| 68 |
+
2025-09-21 15:58:19 - INFO - Computing shape
|
| 69 |
+
2025-09-21 15:58:19 - INFO - Adding image type "Original" with custom settings: {}
|
| 70 |
+
2025-09-21 15:58:19 - INFO - Calculating features for original image
|
| 71 |
+
2025-09-21 15:58:19 - INFO - Computing firstorder
|
| 72 |
+
2025-09-21 15:58:19 - INFO - Computing glcm
|
| 73 |
+
2025-09-21 15:58:19 - WARNING - GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
|
| 74 |
+
2025-09-21 15:58:19 - INFO - Computing gldm
|
| 75 |
+
2025-09-21 15:58:19 - INFO - Computing glrlm
|
| 76 |
+
2025-09-21 15:58:19 - INFO - Computing glszm
|
| 77 |
+
2025-09-21 15:58:19 - INFO - Computing ngtdm
|
| 78 |
+
2025-09-21 15:58:20 - INFO - Calculating features with label: 1
|
| 79 |
+
2025-09-21 15:58:20 - INFO - Loading image and mask
|
| 80 |
+
2025-09-21 15:58:32 - INFO - Applying resampling from spacing [0.78125 0.78125 0.625 ] and size [512 512 568] to spacing [1. 1. 1.] and size [27, 24, 23]
|
| 81 |
+
2025-09-21 15:58:42 - INFO - Computing shape
|
| 82 |
+
2025-09-21 15:58:42 - INFO - Adding image type "Original" with custom settings: {}
|
| 83 |
+
2025-09-21 15:58:42 - INFO - Calculating features for original image
|
| 84 |
+
2025-09-21 15:58:42 - INFO - Computing firstorder
|
| 85 |
+
2025-09-21 15:58:42 - INFO - Computing glcm
|
| 86 |
+
2025-09-21 15:58:42 - WARNING - GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
|
| 87 |
+
2025-09-21 15:58:42 - INFO - Computing gldm
|
| 88 |
+
2025-09-21 15:58:42 - INFO - Computing glrlm
|
| 89 |
+
2025-09-21 15:58:42 - INFO - Computing glszm
|
| 90 |
+
2025-09-21 15:58:42 - INFO - Computing ngtdm
|
| 91 |
+
2025-09-21 15:58:43 - INFO - ---Loading---: 2
|
| 92 |
+
2025-09-21 15:58:43 - INFO - Loading the Image:DLCS_0002.nii.gz
|
| 93 |
+
2025-09-21 15:58:43 - INFO - Number of Annotations:1
|
| 94 |
+
2025-09-21 15:58:45 - INFO - Calculating features with label: 1
|
| 95 |
+
2025-09-21 15:58:45 - INFO - Loading image and mask
|
| 96 |
+
2025-09-21 15:58:58 - INFO - Applying resampling from spacing [0.70703125 0.70703125 0.60000002] and size [512 512 569] to spacing [1. 1. 1.] and size [26, 25, 25]
|
| 97 |
+
2025-09-21 15:59:08 - INFO - Computing shape
|
| 98 |
+
2025-09-21 15:59:08 - INFO - Adding image type "Original" with custom settings: {}
|
| 99 |
+
2025-09-21 15:59:08 - INFO - Calculating features for original image
|
| 100 |
+
2025-09-21 15:59:08 - INFO - Computing firstorder
|
| 101 |
+
2025-09-21 15:59:08 - INFO - Computing glcm
|
| 102 |
+
2025-09-21 15:59:08 - WARNING - GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
|
| 103 |
+
2025-09-21 15:59:08 - INFO - Computing gldm
|
| 104 |
+
2025-09-21 15:59:08 - INFO - Computing glrlm
|
| 105 |
+
2025-09-21 15:59:08 - INFO - Computing glszm
|
| 106 |
+
2025-09-21 15:59:08 - INFO - Computing ngtdm
|
| 107 |
+
2025-09-21 19:03:18 - INFO - Output CSV File: /app/demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.csv
|
| 108 |
+
2025-09-21 19:03:18 - INFO - Error CSV File: /app/demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm_Error.csv
|
| 109 |
+
2025-09-21 19:03:18 - INFO - Log File Created: /app/demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm.log
|
| 110 |
+
2025-09-21 19:03:18 - INFO - File names generated successfully.
|
| 111 |
+
2025-09-21 19:03:18 - INFO - No valid config parameter, using defaults: {'minimumROIDimensions': 2, 'minimumROISize': None, 'normalize': False, 'normalizeScale': 1, 'removeOutliers': None, 'resampledPixelSpacing': None, 'interpolator': 'sitkBSpline', 'preCrop': False, 'padDistance': 5, 'distances': [1], 'force2D': False, 'force2Ddimension': 0, 'resegmentRange': None, 'label': 1, 'additionalInfo': True}
|
| 112 |
+
2025-09-21 19:03:18 - INFO - Enabled image types: {'Original': {}}
|
| 113 |
+
2025-09-21 19:03:18 - INFO - Enabled features: {'firstorder': [], 'glcm': [], 'gldm': [], 'glrlm': [], 'glszm': [], 'ngtdm': [], 'shape': []}
|
| 114 |
+
2025-09-21 19:03:18 - INFO - Applying custom setting overrides: {'binWidth': 25, 'resampledPixelSpacing': [1, 1, 1], 'interpolator': 23, 'labelInterpolator': 1}
|
| 115 |
+
2025-09-21 19:03:18 - INFO - ---Loading---: 1
|
| 116 |
+
2025-09-21 19:03:18 - INFO - Loading the Image:DLCS_0001.nii.gz
|
| 117 |
+
2025-09-21 19:03:18 - INFO - Number of Annotations:2
|
| 118 |
+
2025-09-21 19:03:22 - INFO - Calculating features with label: 1
|
| 119 |
+
2025-09-21 19:03:22 - INFO - Loading image and mask
|
| 120 |
+
2025-09-21 19:03:35 - INFO - Applying resampling from spacing [0.78125 0.78125 0.625 ] and size [512 512 568] to spacing [1. 1. 1.] and size [23, 21, 20]
|
| 121 |
+
2025-09-21 19:03:45 - INFO - Computing shape
|
| 122 |
+
2025-09-21 19:03:45 - INFO - Adding image type "Original" with custom settings: {}
|
| 123 |
+
2025-09-21 19:03:45 - INFO - Calculating features for original image
|
| 124 |
+
2025-09-21 19:03:45 - INFO - Computing firstorder
|
| 125 |
+
2025-09-21 19:03:45 - INFO - Computing glcm
|
| 126 |
+
2025-09-21 19:03:45 - WARNING - GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
|
| 127 |
+
2025-09-21 19:03:45 - INFO - Computing gldm
|
| 128 |
+
2025-09-21 19:03:45 - INFO - Computing glrlm
|
| 129 |
+
2025-09-21 19:03:45 - INFO - Computing glszm
|
| 130 |
+
2025-09-21 19:03:45 - INFO - Computing ngtdm
|
| 131 |
+
2025-09-21 19:03:46 - INFO - Calculating features with label: 1
|
| 132 |
+
2025-09-21 19:03:46 - INFO - Loading image and mask
|
| 133 |
+
2025-09-21 19:03:59 - INFO - Applying resampling from spacing [0.78125 0.78125 0.625 ] and size [512 512 568] to spacing [1. 1. 1.] and size [27, 24, 23]
|
| 134 |
+
2025-09-21 19:04:10 - INFO - Computing shape
|
| 135 |
+
2025-09-21 19:04:10 - INFO - Adding image type "Original" with custom settings: {}
|
| 136 |
+
2025-09-21 19:04:10 - INFO - Calculating features for original image
|
| 137 |
+
2025-09-21 19:04:10 - INFO - Computing firstorder
|
| 138 |
+
2025-09-21 19:04:10 - INFO - Computing glcm
|
| 139 |
+
2025-09-21 19:04:10 - WARNING - GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
|
| 140 |
+
2025-09-21 19:04:10 - INFO - Computing gldm
|
| 141 |
+
2025-09-21 19:04:10 - INFO - Computing glrlm
|
| 142 |
+
2025-09-21 19:04:10 - INFO - Computing glszm
|
| 143 |
+
2025-09-21 19:04:10 - INFO - Computing ngtdm
|
| 144 |
+
2025-09-21 19:04:11 - INFO - ---Loading---: 2
|
| 145 |
+
2025-09-21 19:04:11 - INFO - Loading the Image:DLCS_0002.nii.gz
|
| 146 |
+
2025-09-21 19:04:11 - INFO - Number of Annotations:1
|
| 147 |
+
2025-09-21 19:04:13 - INFO - Calculating features with label: 1
|
| 148 |
+
2025-09-21 19:04:13 - INFO - Loading image and mask
|
| 149 |
+
2025-09-21 19:04:25 - INFO - Applying resampling from spacing [0.70703125 0.70703125 0.60000002] and size [512 512 569] to spacing [1. 1. 1.] and size [26, 25, 25]
|
| 150 |
+
2025-09-21 19:04:35 - INFO - Computing shape
|
| 151 |
+
2025-09-21 19:04:35 - INFO - Adding image type "Original" with custom settings: {}
|
| 152 |
+
2025-09-21 19:04:35 - INFO - Calculating features for original image
|
| 153 |
+
2025-09-21 19:04:35 - INFO - Computing firstorder
|
| 154 |
+
2025-09-21 19:04:35 - INFO - Computing glcm
|
| 155 |
+
2025-09-21 19:04:35 - WARNING - GLCM is symmetrical, therefore Sum Average = 2 * Joint Average, only 1 needs to be calculated
|
| 156 |
+
2025-09-21 19:04:35 - INFO - Computing gldm
|
| 157 |
+
2025-09-21 19:04:35 - INFO - Computing glrlm
|
| 158 |
+
2025-09-21 19:04:35 - INFO - Computing glszm
|
| 159 |
+
2025-09-21 19:04:35 - INFO - Computing ngtdm
|
demofolder/output/PyRadiomics_CandidateSeg_DLCSD24_knn_expand_2.0mm_Error.csv
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
ct_nifti_file
|