| # Requirements generated from pip freeze | |
| # Cleaned for HuggingFace Spaces deployment | |
| Brotli==1.1.0 | |
| Deprecated==1.2.18 | |
| Jinja2==3.1.6 | |
| MarkupSafe==3.0.3 | |
| PIMS==0.7 | |
| PyYAML==6.0.3 | |
| Pygments==2.19.2 | |
| aiobotocore==2.25.0 | |
| aiofiles==24.1.0 | |
| aiohappyeyeballs==2.6.1 | |
| aiohttp==3.13.1 | |
| aioitertools==0.12.0 | |
| aiosignal==1.4.0 | |
| anndata==0.12.2 | |
| annotated-doc==0.0.3 | |
| annotated-types==0.7.0 | |
| anthropic==0.71.0 | |
| anyio==4.11.0 | |
| array-api-compat==1.12.0 | |
| asciitree==0.3.3 | |
| attrs==25.3.0 | |
| botocore==1.40.49 | |
| certifi==2025.10.5 | |
| charset-normalizer==3.4.4 | |
| click==8.2.1 | |
| cloudpickle==3.1.1 | |
| colorcet==3.1.0 | |
| contourpy==1.3.3 | |
| cycler==0.12.1 | |
| cyclopts==3.23.0 | |
| dask-expr==1.1.19 | |
| dask-image==2024.5.3 | |
| dask==2024.11.2 | |
| datashader==0.18.2 | |
| distro==1.9.0 | |
| docstring_parser==0.17.0 | |
| docutils==0.22.2 | |
| dotenv==0.9.9 | |
| fastapi==0.120.0 | |
| fasteners==0.20 | |
| ffmpy==0.6.4 | |
| filelock==3.20.0 | |
| fonttools==4.60.1 | |
| frozenlist==1.8.0 | |
| fsspec==2025.9.0 | |
| geopandas==1.1.1 | |
| gradio==5.49.1 | |
| gradio_client==1.13.3 | |
| groovy==0.1.2 | |
| h11==0.16.0 | |
| h5py==3.15.1 | |
| hf-xet==1.2.0 | |
| httpcore==1.0.9 | |
| httpx==0.28.1 | |
| huggingface-hub==0.36.0 | |
| idna==3.11 | |
| imagecodecs==2025.8.2 | |
| imageio==2.37.0 | |
| importlib_metadata==8.7.0 | |
| jiter==0.10.0 | |
| jmespath==1.0.1 | |
| joblib==1.5.2 | |
| jsonpatch==1.33 | |
| jsonpointer==3.0.0 | |
| kiwisolver==1.4.9 | |
| langchain-anthropic==1.0.0 | |
| langchain-core==1.0.1 | |
| langchain-huggingface==1.0.0 | |
| langchain-ollama==1.0.0 | |
| langchain-openai==1.0.1 | |
| langchain-text-splitters==1.0.0 | |
| langchain==1.0.2 | |
| langgraph-checkpoint==2.1.1 | |
| langgraph-prebuilt==1.0.1 | |
| langgraph-sdk==0.2.3 | |
| langgraph==1.0.1 | |
| langsmith==0.4.18 | |
| lazy_loader==0.4 | |
| lazyslide==0.9.2 | |
| legacy-api-wrap==1.4.1 | |
| legendkit==0.3.6 | |
| llvmlite==0.44.0 | |
| locket==1.0.0 | |
| markdown-it-py==4.0.0 | |
| matplotlib-scalebar==0.9.0 | |
| matplotlib==3.10.5 | |
| mdurl==0.1.2 | |
| mpmath==1.3.0 | |
| multidict==6.7.0 | |
| multipledispatch==1.0.0 | |
| multiscale_spatial_image==2.0.3 | |
| natsort==8.4.0 | |
| networkx==3.5 | |
| numba==0.61.2 | |
| numcodecs==0.15.1 | |
| numpy==2.2.6 | |
| nvidia-cublas-cu12==12.8.4.1 | |
| nvidia-cuda-cupti-cu12==12.8.90 | |
| nvidia-cuda-nvrtc-cu12==12.8.93 | |
| nvidia-cuda-runtime-cu12==12.8.90 | |
| nvidia-cudnn-cu12==9.10.2.21 | |
| nvidia-cufft-cu12==11.3.3.83 | |
| nvidia-cufile-cu12==1.13.1.3 | |
| nvidia-curand-cu12==10.3.9.90 | |
| nvidia-cusolver-cu12==11.7.3.90 | |
| nvidia-cusparse-cu12==12.5.8.93 | |
| nvidia-cusparselt-cu12==0.7.1 | |
| nvidia-nccl-cu12==2.27.5 | |
| nvidia-nvjitlink-cu12==12.8.93 | |
| nvidia-nvshmem-cu12==3.3.20 | |
| nvidia-nvtx-cu12==12.8.90 | |
| ollama==0.6.0 | |
| ome-zarr==0.11.1 | |
| openai==2.6.1 | |
| opencv-python-headless==4.11.0.86 | |
| openslide-bin==4.0.0.8 | |
| openslide-python==1.4.2 | |
| orjson==3.11.3 | |
| ormsgpack==1.10.0 | |
| packaging==25.0 | |
| pandas==2.3.3 | |
| param==2.2.1 | |
| partd==1.4.2 | |
| pillow==11.3.0 | |
| platformdirs==4.5.0 | |
| pooch==1.8.2 | |
| propcache==0.4.1 | |
| psutil==7.1.2 | |
| pyarrow==21.0.0 | |
| pyct==0.6.0 | |
| pydantic==2.11.10 | |
| pydantic_core==2.33.2 | |
| pydub==0.25.1 | |
| pyogrio==0.11.1 | |
| pyparsing==3.2.5 | |
| pyproj==3.7.2 | |
| python-dateutil==2.9.0.post0 | |
| python-dotenv==1.2.1 | |
| python-multipart==0.0.20 | |
| pytz==2025.2 | |
| regex==2025.10.23 | |
| requests-toolbelt==1.0.0 | |
| requests==2.32.5 | |
| rich-rst==1.3.1 | |
| rich==14.1.0 | |
| ruff==0.14.2 | |
| s3fs==2025.9.0 | |
| safehttpx==0.1.7 | |
| safetensors==0.6.2 | |
| scikit-image==0.25.2 | |
| scikit-learn==1.7.2 | |
| scipy==1.16.2 | |
| seaborn==0.13.2 | |
| semantic-version==2.10.0 | |
| shapely==2.1.1 | |
| shellingham==1.5.4 | |
| six==1.17.0 | |
| slicerator==1.1.0 | |
| sniffio==1.3.1 | |
| spatial_image==1.2.3 | |
| spatialdata==0.5.0 | |
| starlette==0.48.0 | |
| sympy==1.14.0 | |
| tenacity==9.1.2 | |
| threadpoolctl==3.6.0 | |
| tifffile==2025.5.10 | |
| tiffslide==2.5.1 | |
| tiktoken==0.11.0 | |
| timm==1.0.19 | |
| tokenizers==0.22.1 | |
| tomlkit==0.13.3 | |
| toolz==1.1.0 | |
| torch==2.9.0 | |
| torchvision==0.24.0 | |
| tqdm==4.67.1 | |
| triton==3.5.0 | |
| typer==0.20.0 | |
| typing-inspection==0.4.2 | |
| typing_extensions==4.15.0 | |
| tzdata==2025.2 | |
| urllib3==2.5.0 | |
| uvicorn==0.38.0 | |
| websockets==15.0.1 | |
| wrapt==1.17.3 | |
| wsidata==0.7.1 | |
| xarray-dataclass==3.0.0 | |
| xarray-schema==0.0.3 | |
| xarray-spatial==0.4.0 | |
| xarray==2025.8.0 | |
| xxhash==3.5.0 | |
| yarl==1.22.0 | |
| zarr==2.18.7 | |
| zipp==3.23.0 | |
| zstandard==0.24.0 | |