Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer") - Inference
- Notebooks
- Google Colab
- Kaggle
| geneformer.tokenizer | |
| ==================== | |
| .. automodule:: geneformer.tokenizer | |
| :members: | |
| :undoc-members: | |
| :show-inheritance: | |
| :exclude-members: | |
| create_dataset, | |
| tokenize_anndata, | |
| tokenize_files, | |
| tokenize_loom, | |
| rank_genes, | |
| tokenize_cell, | |
| sum_ensembl_ids | |