chempile-mlift / README.md
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Add carcinogens-multimodal config via script
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metadata
dataset_info:
  - config_name: BBBP-multimodal
    features:
      - name: IMAGE
        dtype: image
      - name: template
        dtype: string
      - name: template_original
        dtype: string
      - name: SMILES
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      - name: SMILES_ORIGINAL
        dtype: string
      - name: SELFIES
        dtype: string
      - name: InChI
        dtype: string
      - name: IUPAC
        dtype: string
      - name: split
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      - name: p_np
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        num_examples: 2541
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        num_examples: 9611
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        num_examples: 1764
    download_size: 28494474
    dataset_size: 188441850.92000002
  - config_name: MUV_466-multimodal
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        dtype: image
      - name: template
        dtype: string
      - name: template_original
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      - name: SMILES
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      - name: SELFIES
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      - name: InChI
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      - name: IUPAC
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      - name: MUV-466
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        num_examples: 10985
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        num_examples: 52010
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  - config_name: MUV_644-multimodal
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        dtype: image
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      - name: SMILES
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  - config_name: MUV_652-multimodal
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        dtype: image
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      - name: SMILES
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  - config_name: MUV_737-multimodal
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      - name: MUV-737
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  - config_name: MUV_846-multimodal
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        dtype: image
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  - config_name: MUV_859-multimodal
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        dtype: image
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      - name: SMILES
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  - config_name: SIDER-multimodal
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        dtype: image
      - name: template
        dtype: string
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      - name: SMILES
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      - name: InChI
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      - name: IUPAC
        dtype: string
      - name: split
        dtype: string
      - name: hepatobiliary_disorders
        dtype: int64
      - name: metabolism_and_nutrition_disorders
        dtype: int64
      - name: eye_disorders
        dtype: int64
      - name: musculoskeletal_and_connective_tissue_disorders
        dtype: int64
      - name: gastrointestinal_disorders
        dtype: int64
      - name: immune_system_disorders
        dtype: int64
      - name: reproductive_system_and_breast_disorders
        dtype: int64
      - name: neoplasms_benign_malignant_and_unspecified_(incl_cysts_and_polyps)
        dtype: int64
      - name: general_disorders_and_administration_site_conditions
        dtype: int64
      - name: endocrine_disorders
        dtype: int64
      - name: surgical_and_medical_procedures
        dtype: int64
      - name: vascular_disorders
        dtype: int64
      - name: blood_and_lymphatic_system_disorders
        dtype: int64
      - name: skin_and_subcutaneous_tissue_disorders
        dtype: int64
      - name: congenital_familial_and_genetic_disorders
        dtype: int64
      - name: infections_and_infestations
        dtype: int64
      - name: respiratory_thoracic_and_mediastinal_disorders
        dtype: int64
      - name: psychiatric_disorders
        dtype: int64
      - name: renal_and_urinary_disorders
        dtype: int64
      - name: pregnancy_puerperium_and_perinatal_conditions
        dtype: int64
      - name: ear_and_labyrinth_disorders
        dtype: int64
      - name: cardiac_disorders
        dtype: int64
      - name: nervous_system_disorders
        dtype: int64
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  - config_name: aminoacids-multimodal
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        dtype: image
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      - name: SMILES
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      - name: InChI
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      - name: IUPAC
        dtype: string
      - name: split
        dtype: string
      - name: aminoacid_name
        dtype: string
      - name: three_letter_code
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        dtype: string
      - name: type
        dtype: string
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  - config_name: caco2_wang-multimodal
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        dtype: image
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      - name: InChI
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      - name: compound_name
        dtype: string
      - name: permeability
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  - config_name: carcinogens-multimodal
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      - name: IMAGE
        dtype: image
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        dtype: string
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      - name: InChI
        dtype: string
      - name: IUPAC
        dtype: string
      - name: split
        dtype: string
      - name: compound_id
        dtype: string
      - name: carcinogen
        dtype: int64
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  - config_name: chebi_20-multimodal
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        dtype: image
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      - name: description
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  - config_name: clearance_astrazeneca-multimodal
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        dtype: image
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      - name: InChI
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      - name: split
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      - name: chembl_id
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      - name: drug_clearance
        dtype: float64
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  - config_name: clintox-multimodal
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        dtype: image
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      - name: compound_id
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      - name: clinical_toxicity
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  - config_name: cyp3a4_substrate_carbonmangels-multimodal
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        dtype: image
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      - name: CYP3A4_Substrate
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  - config_name: cyp_p450_1a2_inhibition_veith_et_al-multimodal
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      - name: CYP1A2_inhibition
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  - config_name: herg_karim_et_al-multimodal
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      - name: herg_blocker
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  - config_name: hiv-multimodal
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  - config_name: ld50_catmos-multimodal
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        dtype: image
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      - name: Canonical_QSARr
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      - name: CATMoS_LD50_mgkg
        dtype: float64
      - name: num_ghose_violations
        dtype: int64
      - name: num_lead_likeness_violations
        dtype: int64
      - name: num_lipinski_violations
        dtype: int64
      - name: molecular_mass
        dtype: float64
      - name: num_carbon_atoms
        dtype: int64
      - name: num_oxygen_atoms
        dtype: int64
      - name: log10_LD50
        dtype: float64
      - name: Name
        dtype: string
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    download_size: 110718808
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  - config_name: nr_aromatase_tox21-multimodal
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        dtype: image
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        dtype: int64
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    download_size: 84869920
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  - config_name: nr_er_tox21-multimodal
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      - name: toxicity_NR-ER
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    download_size: 90477269
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  - config_name: sr_atad5_tox21-multimodal
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        num_examples: 13461
    download_size: 104215405
    dataset_size: 1630270466.6
  - config_name: sr_mmp_tox21-multimodal
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      - name: toxicity_SR-MMP
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    download_size: 80973043
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  - config_name: sr_p53_tox21-multimodal
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      - name: toxicity_SR-p53
        dtype: int64
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    download_size: 95003680
    dataset_size: 1398433797.82
  - config_name: thermosol-multimodal
    features:
      - name: IMAGE
        dtype: image
      - name: template
        dtype: string
      - name: template_original
        dtype: string
      - name: SMILES
        dtype: string
      - name: SMILES_ORIGINAL
        dtype: string
      - name: SELFIES
        dtype: string
      - name: InChI
        dtype: string
      - name: IUPAC
        dtype: string
      - name: split
        dtype: string
      - name: target
        dtype: float64
    splits:
      - name: validation
        num_bytes: 19354847.65
        num_examples: 1395
      - name: test
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        num_examples: 1185
      - name: train
        num_bytes: 84915074.8
        num_examples: 6140
    download_size: 23617234
    dataset_size: 120049282.39999999
  - config_name: uniprot_binding_sites_multiple-multimodal
    features:
      - name: IMAGE
        dtype: image
      - name: template
        dtype: string
      - name: template_original
        dtype: string
      - name: SMILES
        dtype: string
      - name: SMILES_ORIGINAL
        dtype: string
      - name: SELFIES
        dtype: string
      - name: InChI
        dtype: string
      - name: IUPAC
        dtype: string
      - name: split
        dtype: string
      - name: sequence
        dtype: string
      - name: start_binding_site
        dtype: int64
      - name: end_binding_site
        dtype: int64
    splits:
      - name: train
        num_bytes: 14978841938.82
        num_examples: 771186
      - name: test
        num_bytes: 3190333642.84
        num_examples: 220332
      - name: validation
        num_bytes: 209416866.86
        num_examples: 10578
    download_size: 1049233833
    dataset_size: 18378592448.52
configs:
  - config_name: BBBP-multimodal
    data_files:
      - split: test
        path: BBBP-multimodal/test-*
      - split: train
        path: BBBP-multimodal/train-*
      - split: validation
        path: BBBP-multimodal/validation-*
  - config_name: MUV_466-multimodal
    data_files:
      - split: validation
        path: MUV_466-multimodal/validation-*
      - split: test
        path: MUV_466-multimodal/test-*
      - split: train
        path: MUV_466-multimodal/train-*
  - config_name: MUV_644-multimodal
    data_files:
      - split: train
        path: MUV_644-multimodal/train-*
      - split: validation
        path: MUV_644-multimodal/validation-*
      - split: test
        path: MUV_644-multimodal/test-*
  - config_name: MUV_652-multimodal
    data_files:
      - split: validation
        path: MUV_652-multimodal/validation-*
      - split: test
        path: MUV_652-multimodal/test-*
      - split: train
        path: MUV_652-multimodal/train-*
  - config_name: MUV_737-multimodal
    data_files:
      - split: validation
        path: MUV_737-multimodal/validation-*
      - split: train
        path: MUV_737-multimodal/train-*
      - split: test
        path: MUV_737-multimodal/test-*
  - config_name: MUV_846-multimodal
    data_files:
      - split: train
        path: MUV_846-multimodal/train-*
      - split: test
        path: MUV_846-multimodal/test-*
      - split: validation
        path: MUV_846-multimodal/validation-*
  - config_name: MUV_859-multimodal
    data_files:
      - split: validation
        path: MUV_859-multimodal/validation-*
      - split: train
        path: MUV_859-multimodal/train-*
      - split: test
        path: MUV_859-multimodal/test-*
  - config_name: SIDER-multimodal
    data_files:
      - split: train
        path: SIDER-multimodal/train-*
      - split: test
        path: SIDER-multimodal/test-*
      - split: validation
        path: SIDER-multimodal/validation-*
  - config_name: aminoacids-multimodal
    data_files:
      - split: train
        path: aminoacids-multimodal/train-*
  - config_name: caco2_wang-multimodal
    data_files:
      - split: test
        path: caco2_wang-multimodal/test-*
      - split: train
        path: caco2_wang-multimodal/train-*
      - split: validation
        path: caco2_wang-multimodal/validation-*
  - config_name: carcinogens-multimodal
    data_files:
      - split: train
        path: carcinogens-multimodal/train-*
      - split: test
        path: carcinogens-multimodal/test-*
      - split: validation
        path: carcinogens-multimodal/validation-*
  - config_name: chebi_20-multimodal
    data_files:
      - split: train
        path: chebi_20-multimodal/train-*
      - split: validation
        path: chebi_20-multimodal/validation-*
      - split: test
        path: chebi_20-multimodal/test-*
  - config_name: clearance_astrazeneca-multimodal
    data_files:
      - split: train
        path: clearance_astrazeneca-multimodal/train-*
      - split: test
        path: clearance_astrazeneca-multimodal/test-*
      - split: validation
        path: clearance_astrazeneca-multimodal/validation-*
  - config_name: clintox-multimodal
    data_files:
      - split: train
        path: clintox-multimodal/train-*
      - split: test
        path: clintox-multimodal/test-*
      - split: validation
        path: clintox-multimodal/validation-*
  - config_name: cyp3a4_substrate_carbonmangels-multimodal
    data_files:
      - split: validation
        path: cyp3a4_substrate_carbonmangels-multimodal/validation-*
      - split: train
        path: cyp3a4_substrate_carbonmangels-multimodal/train-*
      - split: test
        path: cyp3a4_substrate_carbonmangels-multimodal/test-*
  - config_name: cyp_p450_1a2_inhibition_veith_et_al-multimodal
    data_files:
      - split: test
        path: cyp_p450_1a2_inhibition_veith_et_al-multimodal/test-*
      - split: train
        path: cyp_p450_1a2_inhibition_veith_et_al-multimodal/train-*
      - split: validation
        path: cyp_p450_1a2_inhibition_veith_et_al-multimodal/validation-*
  - config_name: herg_karim_et_al-multimodal
    data_files:
      - split: train
        path: herg_karim_et_al-multimodal/train-*
      - split: validation
        path: herg_karim_et_al-multimodal/validation-*
      - split: test
        path: herg_karim_et_al-multimodal/test-*
  - config_name: hiv-multimodal
    data_files:
      - split: train
        path: hiv-multimodal/train-*
      - split: test
        path: hiv-multimodal/test-*
      - split: validation
        path: hiv-multimodal/validation-*
  - config_name: ld50_catmos-multimodal
    data_files:
      - split: train
        path: ld50_catmos-multimodal/train-*
      - split: test
        path: ld50_catmos-multimodal/test-*
      - split: validation
        path: ld50_catmos-multimodal/validation-*
  - config_name: nr_aromatase_tox21-multimodal
    data_files:
      - split: train
        path: nr_aromatase_tox21-multimodal/train-*
      - split: test
        path: nr_aromatase_tox21-multimodal/test-*
      - split: validation
        path: nr_aromatase_tox21-multimodal/validation-*
  - config_name: nr_er_tox21-multimodal
    data_files:
      - split: train
        path: nr_er_tox21-multimodal/train-*
      - split: test
        path: nr_er_tox21-multimodal/test-*
      - split: validation
        path: nr_er_tox21-multimodal/validation-*
  - config_name: sr_atad5_tox21-multimodal
    data_files:
      - split: train
        path: sr_atad5_tox21-multimodal/train-*
      - split: test
        path: sr_atad5_tox21-multimodal/test-*
      - split: validation
        path: sr_atad5_tox21-multimodal/validation-*
  - config_name: sr_mmp_tox21-multimodal
    data_files:
      - split: train
        path: sr_mmp_tox21-multimodal/train-*
      - split: test
        path: sr_mmp_tox21-multimodal/test-*
      - split: validation
        path: sr_mmp_tox21-multimodal/validation-*
  - config_name: sr_p53_tox21-multimodal
    data_files:
      - split: train
        path: sr_p53_tox21-multimodal/train-*
      - split: test
        path: sr_p53_tox21-multimodal/test-*
      - split: validation
        path: sr_p53_tox21-multimodal/validation-*
  - config_name: thermosol-multimodal
    data_files:
      - split: validation
        path: thermosol-multimodal/validation-*
      - split: test
        path: thermosol-multimodal/test-*
      - split: train
        path: thermosol-multimodal/train-*
  - config_name: uniprot_binding_sites_multiple-multimodal
    data_files:
      - split: train
        path: uniprot_binding_sites_multiple-multimodal/train-*
      - split: test
        path: uniprot_binding_sites_multiple-multimodal/test-*
      - split: validation
        path: uniprot_binding_sites_multiple-multimodal/validation-*