The dataset viewer is not available for this split.
Error code: InfoError
Exception: SplitsNotFoundError
Message: The split names could not be parsed from the dataset config.
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/inspect.py", line 289, in get_dataset_config_info
for split_generator in builder._split_generators(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/parquet/parquet.py", line 60, in _split_generators
self.info.features = datasets.Features.from_arrow_schema(pq.read_schema(f))
^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/pyarrow/parquet/core.py", line 2392, in read_schema
file = ParquetFile(
^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/pyarrow/parquet/core.py", line 328, in __init__
self.reader.open(
File "pyarrow/_parquet.pyx", line 1656, in pyarrow._parquet.ParquetReader.open
File "pyarrow/error.pxi", line 89, in pyarrow.lib.check_status
File "/usr/local/lib/python3.12/gzip.py", line 438, in seek
return self._buffer.seek(offset, whence)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/_compression.py", line 139, in seek
while self.read(io.DEFAULT_BUFFER_SIZE):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/gzip.py", line 544, in read
if not self._read_gzip_header():
^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/gzip.py", line 513, in _read_gzip_header
last_mtime = _read_gzip_header(self._fp)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/gzip.py", line 473, in _read_gzip_header
raise BadGzipFile('Not a gzipped file (%r)' % magic)
gzip.BadGzipFile: Not a gzipped file (b'PA')
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/split/first_rows.py", line 208, in compute_first_rows_from_streaming_response
info = get_dataset_config_info(path=dataset, config_name=config, token=hf_token)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/inspect.py", line 294, in get_dataset_config_info
raise SplitsNotFoundError("The split names could not be parsed from the dataset config.") from err
datasets.inspect.SplitsNotFoundError: The split names could not be parsed from the dataset config.Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Proteome-wide VESM variant effect scores
This repository provides precomputed proteome-wide (UniProtKB, hg19, and hg38) variant-effect prediction scores using the latest VESM models developed in the paper "Compressing the collective knowledge of ESM into a single protein language model" by Tuan Dinh, Seon-Kyeong Jang, Noah Zaitlen and Vasilis Ntranos.
- Models: VESM_3B, VESM3, sequence-only VESM3, and VESM++ (available at https://huggingface.co/ntranoslab/vesm).
VESM_3B and VESM3 are individual protein language models based on ESM2 (3B) and ESM3. The sequence-only VESM3 is the version of VESM3 using only sequence as the input. VESM++ is the ensemble of VESM_3B and VESM3.
Please see the corresponding GitHub repo (https://github.com/ntranoslab/vesm) for more details.
License
The predictions of VESM_3B are distributed under the MIT License. The VESM3 and VESM++ models are built with ESM3-Open (EvolutionaryScale), which is available under a non-commercial license agreement.
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