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22.2 kB
| # /// script | |
| # requires-python = ">=3.11" | |
| # dependencies = [ | |
| # "datasets>=4.0.0", | |
| # "huggingface-hub", | |
| # "pillow", | |
| # "tqdm", | |
| # "toolz", | |
| # ] | |
| # | |
| # [tool.hf-jobs] | |
| # image = "vllm/vllm-openai:v0.29.0" | |
| # python = "/usr/bin/python3" | |
| # env = { PYTHONPATH = "/usr/local/lib/python3.12/dist-packages" } | |
| # flavor = "a10g-small" | |
| # secrets = ["HF_TOKEN"] | |
| # /// | |
| """ | |
| Convert document images to markdown using DeepSeek-OCR with vLLM. | |
| This script processes images through the DeepSeek-OCR model to extract | |
| text and structure as markdown, using vLLM for efficient batch processing. | |
| Uses the official vLLM offline pattern: llm.generate() with PIL images | |
| and NGramPerReqLogitsProcessor to prevent repetition on complex documents. | |
| See: https://docs.vllm.ai/projects/recipes/en/latest/DeepSeek/DeepSeek-OCR.html | |
| Run on HF Jobs. vLLM and torch come from the vllm/vllm-openai:v0.29.0 image declared | |
| in the [tool.hf-jobs] header (`hf` CLI 1.32+), which also sets the hardware and the | |
| HF_TOKEN secret. The tag is pinned: vLLM 0.30 breaks the DeepEncoder Triton kernel | |
| (LOG2E NameError), and nightly wheels moved the logits-processor API. Pass --timeout | |
| for a long run. To run on your own GPU: `uv run --with vllm==0.29.0 deepseek-ocr-vllm.py ...`. | |
| Features: | |
| - LaTeX equation recognition | |
| - Table extraction and formatting | |
| - Document structure preservation | |
| - Image grounding and descriptions | |
| - Multilingual support | |
| - Batch processing with vLLM for better performance | |
| """ | |
| import argparse | |
| import io | |
| import json | |
| import logging | |
| import os | |
| import sys | |
| from datetime import datetime | |
| from typing import Any, Dict, Union | |
| import torch | |
| from datasets import load_dataset | |
| from huggingface_hub import DatasetCard, login | |
| from PIL import Image | |
| from toolz import partition_all | |
| from tqdm.auto import tqdm | |
| # Disable vLLM's FlashInfer sampler: it JIT-compiles a CUDA kernel needing nvcc, which the | |
| # default uv-script image lacks (engine init then crashes). Greedy OCR doesn't use it; this | |
| # lets the plain default-image command work. On the vllm/vllm-openai image it's a harmless no-op. | |
| os.environ.setdefault("VLLM_USE_FLASHINFER_SAMPLER", "0") | |
| from vllm import LLM, SamplingParams | |
| from vllm.model_executor.models.deepseek_ocr import NGramPerReqLogitsProcessor | |
| logging.basicConfig(level=logging.INFO) | |
| logger = logging.getLogger(__name__) | |
| # Prompt mode presets (from DeepSeek-OCR GitHub) | |
| PROMPT_MODES = { | |
| "document": "<image>\n<|grounding|>Convert the document to markdown.", | |
| "image": "<image>\n<|grounding|>OCR this image.", | |
| "free": "<image>\nFree OCR.", | |
| "figure": "<image>\nParse the figure.", | |
| "describe": "<image>\nDescribe this image in detail.", | |
| } | |
| def check_cuda_availability(): | |
| """Check if CUDA is available and exit if not.""" | |
| if not torch.cuda.is_available(): | |
| logger.error("CUDA is not available. This script requires a GPU.") | |
| logger.error("Please run on a machine with a CUDA-capable GPU.") | |
| sys.exit(1) | |
| else: | |
| logger.info(f"CUDA is available. GPU: {torch.cuda.get_device_name(0)}") | |
| def ensure_output_columns_free(dataset, columns, overwrite=False): | |
| """Fail fast if an output column would collide with an existing input column. | |
| Adding a column that already exists silently overwrites it (e.g. a ground-truth | |
| `text`/`markdown` column) or crashes on push with a duplicate-column error only | |
| *after* inference has run. Catch it up front. With overwrite=True, drop the clashing | |
| column(s) here instead (logged) so the later add_column is clean. | |
| """ | |
| clash = [c for c in columns if c in dataset.column_names] | |
| if not clash: | |
| return dataset | |
| if overwrite: | |
| logger.warning(f"--overwrite: replacing existing column(s) {clash}") | |
| return dataset.remove_columns(clash) | |
| logger.error( | |
| f"Output column(s) {clash} already exist in the input dataset " | |
| f"(columns: {dataset.column_names})." | |
| ) | |
| logger.error("Choose a different --output-column, or pass --overwrite to replace them.") | |
| sys.exit(1) | |
| def to_pil(image: Union[Image.Image, Dict[str, Any], str]) -> Image.Image: | |
| """Convert various image formats to PIL Image.""" | |
| if isinstance(image, Image.Image): | |
| return image | |
| elif isinstance(image, dict) and "bytes" in image: | |
| return Image.open(io.BytesIO(image["bytes"])) | |
| elif isinstance(image, str): | |
| return Image.open(image) | |
| else: | |
| raise ValueError(f"Unsupported image type: {type(image)}") | |
| def create_dataset_card( | |
| source_dataset: str, | |
| model: str, | |
| num_samples: int, | |
| processing_time: str, | |
| batch_size: int, | |
| max_model_len: int, | |
| max_tokens: int, | |
| gpu_memory_utilization: float, | |
| image_column: str = "image", | |
| split: str = "train", | |
| ) -> str: | |
| """Create a dataset card documenting the OCR process.""" | |
| model_name = model.split("/")[-1] | |
| return f"""--- | |
| tags: | |
| - ocr | |
| - document-processing | |
| - deepseek | |
| - deepseek-ocr | |
| - markdown | |
| - uv-script | |
| - generated | |
| --- | |
| # Document OCR using {model_name} | |
| This dataset contains markdown-formatted OCR results from images in [{source_dataset}](https://huggingface.co/datasets/{source_dataset}) using DeepSeek-OCR. | |
| ## Processing Details | |
| - **Source Dataset**: [{source_dataset}](https://huggingface.co/datasets/{source_dataset}) | |
| - **Model**: [{model}](https://huggingface.co/{model}) | |
| - **Number of Samples**: {num_samples:,} | |
| - **Processing Time**: {processing_time} | |
| - **Processing Date**: {datetime.now().strftime("%Y-%m-%d %H:%M UTC")} | |
| ### Configuration | |
| - **Image Column**: `{image_column}` | |
| - **Output Column**: `markdown` | |
| - **Dataset Split**: `{split}` | |
| - **Batch Size**: {batch_size} | |
| - **Max Model Length**: {max_model_len:,} tokens | |
| - **Max Output Tokens**: {max_tokens:,} | |
| - **GPU Memory Utilization**: {gpu_memory_utilization:.1%} | |
| ## Model Information | |
| DeepSeek-OCR is a state-of-the-art document OCR model that excels at: | |
| - LaTeX equations - Mathematical formulas preserved in LaTeX format | |
| - Tables - Extracted and formatted as HTML/markdown | |
| - Document structure - Headers, lists, and formatting maintained | |
| - Image grounding - Spatial layout and bounding box information | |
| - Complex layouts - Multi-column and hierarchical structures | |
| - Multilingual - Supports multiple languages | |
| ## Dataset Structure | |
| The dataset contains all original columns plus: | |
| - `markdown`: The extracted text in markdown format with preserved structure | |
| - `inference_info`: JSON list tracking all OCR models applied to this dataset | |
| ## Usage | |
| ```python | |
| from datasets import load_dataset | |
| import json | |
| # Load the dataset | |
| dataset = load_dataset("{{{{output_dataset_id}}}}", split="{split}") | |
| # Access the markdown text | |
| for example in dataset: | |
| print(example["markdown"]) | |
| break | |
| # View all OCR models applied to this dataset | |
| inference_info = json.loads(dataset[0]["inference_info"]) | |
| for info in inference_info: | |
| print(f"Column: {{{{info['column_name']}}}} - Model: {{{{info['model_id']}}}}") | |
| ``` | |
| ## Reproduction | |
| This dataset was generated using the [uv-scripts/ocr](https://huggingface.co/datasets/uv-scripts/ocr) DeepSeek OCR vLLM script: | |
| ```bash | |
| uv run https://huggingface.co/datasets/uv-scripts/ocr/raw/main/deepseek-ocr-vllm.py \\\\ | |
| {source_dataset} \\\\ | |
| <output-dataset> \\\\ | |
| --image-column {image_column} | |
| ``` | |
| ## Performance | |
| - **Processing Speed**: ~{num_samples / (float(processing_time.split()[0]) * 60):.1f} images/second | |
| - **Processing Method**: Batch processing with vLLM (2-3x speedup over sequential) | |
| Generated with [UV Scripts](https://huggingface.co/uv-scripts) | |
| """ | |
| def main( | |
| input_dataset: str, | |
| output_dataset: str, | |
| image_column: str = "image", | |
| batch_size: int = 8, | |
| model: str = "deepseek-ai/DeepSeek-OCR", | |
| max_model_len: int = 8192, | |
| max_tokens: int = 8192, | |
| gpu_memory_utilization: float = 0.8, | |
| prompt_mode: str = "document", | |
| prompt: str = None, | |
| hf_token: str = None, | |
| split: str = "train", | |
| max_samples: int = None, | |
| private: bool = False, | |
| shuffle: bool = False, | |
| seed: int = 42, | |
| output_column: str = "markdown", | |
| overwrite: bool = False, | |
| config: str = None, | |
| create_pr: bool = False, | |
| verbose: bool = False, | |
| ): | |
| """Process images from HF dataset through DeepSeek-OCR model with vLLM.""" | |
| # Check CUDA availability first | |
| check_cuda_availability() | |
| # Track processing start time | |
| start_time = datetime.now() | |
| # Login to HF if token provided | |
| HF_TOKEN = hf_token or os.environ.get("HF_TOKEN") | |
| if HF_TOKEN: | |
| login(token=HF_TOKEN) | |
| # Determine prompt | |
| if prompt is not None: | |
| final_prompt = prompt | |
| logger.info("Using custom prompt") | |
| elif prompt_mode in PROMPT_MODES: | |
| final_prompt = PROMPT_MODES[prompt_mode] | |
| logger.info(f"Using prompt mode: {prompt_mode}") | |
| else: | |
| raise ValueError( | |
| f"Invalid prompt mode '{prompt_mode}'. " | |
| f"Use one of {list(PROMPT_MODES.keys())} or specify --prompt" | |
| ) | |
| logger.info(f"Prompt: {final_prompt}") | |
| # Load dataset | |
| logger.info(f"Loading dataset: {input_dataset}") | |
| dataset = load_dataset(input_dataset, split=split) | |
| # Validate image column | |
| if image_column not in dataset.column_names: | |
| raise ValueError( | |
| f"Column '{image_column}' not found. Available: {dataset.column_names}" | |
| ) | |
| # Fail fast if the output column would collide with an existing input column | |
| dataset = ensure_output_columns_free(dataset, [output_column], overwrite=overwrite) | |
| # Shuffle if requested | |
| if shuffle: | |
| logger.info(f"Shuffling dataset with seed {seed}") | |
| dataset = dataset.shuffle(seed=seed) | |
| # Limit samples if requested | |
| if max_samples: | |
| dataset = dataset.select(range(min(max_samples, len(dataset)))) | |
| logger.info(f"Limited to {len(dataset)} samples") | |
| # Initialize vLLM (matches official DeepSeek-OCR vLLM recipe) | |
| logger.info(f"Initializing vLLM with model: {model}") | |
| logger.info("This may take a few minutes on first run...") | |
| llm = LLM( | |
| model=model, | |
| trust_remote_code=True, | |
| max_model_len=max_model_len, | |
| gpu_memory_utilization=gpu_memory_utilization, | |
| enable_prefix_caching=False, | |
| mm_processor_cache_gb=0, | |
| logits_processors=[NGramPerReqLogitsProcessor], | |
| ) | |
| sampling_params = SamplingParams( | |
| temperature=0.0, | |
| max_tokens=max_tokens, | |
| skip_special_tokens=False, | |
| extra_args=dict( | |
| ngram_size=30, | |
| window_size=90, | |
| whitelist_token_ids={128821, 128822}, | |
| ), | |
| ) | |
| logger.info(f"Processing {len(dataset)} images in batches of {batch_size}") | |
| # Process images in batches using llm.generate() with PIL images | |
| all_markdown = [] | |
| for batch_indices in tqdm( | |
| partition_all(batch_size, range(len(dataset))), | |
| total=(len(dataset) + batch_size - 1) // batch_size, | |
| desc="DeepSeek-OCR vLLM processing", | |
| ): | |
| batch_indices = list(batch_indices) | |
| batch_images = [dataset[i][image_column] for i in batch_indices] | |
| try: | |
| # Build model inputs with PIL images (official vLLM pattern) | |
| model_inputs = [] | |
| for img in batch_images: | |
| pil_img = to_pil(img).convert("RGB") | |
| model_inputs.append( | |
| {"prompt": final_prompt, "multi_modal_data": {"image": pil_img}} | |
| ) | |
| # Process with vLLM generate API | |
| outputs = llm.generate(model_inputs, sampling_params) | |
| # Extract outputs | |
| for output in outputs: | |
| text = output.outputs[0].text.strip() | |
| all_markdown.append(text) | |
| except Exception as e: | |
| logger.error(f"Error processing batch: {e}") | |
| all_markdown.extend(["[OCR FAILED]"] * len(batch_images)) | |
| # Calculate processing time | |
| processing_duration = datetime.now() - start_time | |
| processing_time_str = f"{processing_duration.total_seconds() / 60:.1f} min" | |
| # Add output column to dataset | |
| logger.info(f"Adding '{output_column}' column to dataset") | |
| dataset = dataset.add_column(output_column, all_markdown) | |
| # Handle inference_info tracking | |
| logger.info("Updating inference_info...") | |
| inference_entry = { | |
| "model_id": model, | |
| "model_name": "DeepSeek-OCR", | |
| "column_name": output_column, | |
| "timestamp": datetime.now().isoformat(), | |
| "prompt_mode": prompt_mode if prompt is None else "custom", | |
| "batch_size": batch_size, | |
| "max_tokens": max_tokens, | |
| "gpu_memory_utilization": gpu_memory_utilization, | |
| "max_model_len": max_model_len, | |
| "script": "deepseek-ocr-vllm.py", | |
| "script_url": "https://huggingface.co/datasets/uv-scripts/ocr/raw/main/deepseek-ocr-vllm.py", | |
| } | |
| if "inference_info" in dataset.column_names: | |
| logger.info("Updating existing inference_info column") | |
| def update_inference_info(example): | |
| try: | |
| existing_info = ( | |
| json.loads(example["inference_info"]) | |
| if example["inference_info"] | |
| else [] | |
| ) | |
| except (json.JSONDecodeError, TypeError): | |
| existing_info = [] | |
| existing_info.append(inference_entry) | |
| return {"inference_info": json.dumps(existing_info)} | |
| dataset = dataset.map(update_inference_info) | |
| else: | |
| logger.info("Creating new inference_info column") | |
| inference_list = [json.dumps([inference_entry])] * len(dataset) | |
| dataset = dataset.add_column("inference_info", inference_list) | |
| # Push to hub | |
| logger.info(f"Pushing to {output_dataset}") | |
| dataset.push_to_hub( | |
| output_dataset, | |
| private=private, | |
| token=HF_TOKEN, | |
| **({"config_name": config} if config else {}), | |
| create_pr=create_pr, | |
| commit_message=f"Add {model} OCR results ({len(dataset)} samples)" | |
| + (f" [{config}]" if config else ""), | |
| ) | |
| # Create and push dataset card | |
| logger.info("Creating dataset card...") | |
| card_content = create_dataset_card( | |
| source_dataset=input_dataset, | |
| model=model, | |
| num_samples=len(dataset), | |
| processing_time=processing_time_str, | |
| batch_size=batch_size, | |
| max_model_len=max_model_len, | |
| max_tokens=max_tokens, | |
| gpu_memory_utilization=gpu_memory_utilization, | |
| image_column=image_column, | |
| split=split, | |
| ) | |
| card = DatasetCard(card_content) | |
| card.push_to_hub(output_dataset, token=HF_TOKEN) | |
| logger.info("✅ Dataset card created and pushed!") | |
| logger.info("✅ OCR conversion complete!") | |
| logger.info( | |
| f"Dataset available at: https://huggingface.co/datasets/{output_dataset}" | |
| ) | |
| logger.info(f"Processing time: {processing_time_str}") | |
| if verbose: | |
| import importlib.metadata | |
| logger.info("--- Resolved package versions ---") | |
| for pkg in ["vllm", "transformers", "torch", "datasets", "pyarrow", "pillow"]: | |
| try: | |
| logger.info(f" {pkg}=={importlib.metadata.version(pkg)}") | |
| except importlib.metadata.PackageNotFoundError: | |
| logger.info(f" {pkg}: not installed") | |
| logger.info("--- End versions ---") | |
| if __name__ == "__main__": | |
| # Show example usage if no arguments | |
| if len(sys.argv) == 1: | |
| print("=" * 80) | |
| print("DeepSeek-OCR to Markdown Converter (vLLM)") | |
| print("=" * 80) | |
| print("\nThis script converts document images to markdown using") | |
| print("DeepSeek-OCR with vLLM for efficient batch processing.") | |
| print("\nFeatures:") | |
| print("- LaTeX equation recognition") | |
| print("- Table extraction and formatting") | |
| print("- Document structure preservation") | |
| print("- Image grounding and spatial layout") | |
| print("- Multilingual support") | |
| print("- Fast batch processing with vLLM") | |
| print("\nExample usage:") | |
| print("\n1. Basic OCR conversion (document mode with grounding):") | |
| print(" uv run deepseek-ocr-vllm.py document-images markdown-docs") | |
| print("\n2. Parse figures from documents:") | |
| print( | |
| " uv run deepseek-ocr-vllm.py scientific-papers figures --prompt-mode figure" | |
| ) | |
| print("\n3. Free OCR without layout:") | |
| print(" uv run deepseek-ocr-vllm.py images text --prompt-mode free") | |
| print("\n4. Process a subset for testing:") | |
| print( | |
| " uv run deepseek-ocr-vllm.py large-dataset test-output --max-samples 10" | |
| ) | |
| print("\n5. Running on HF Jobs:") | |
| print(" (image, hardware and HF_TOKEN come from the script's [tool.hf-jobs] header)") | |
| print(" hf jobs uv run \\") | |
| print( | |
| " https://huggingface.co/datasets/uv-scripts/ocr/raw/main/deepseek-ocr-vllm.py \\" | |
| ) | |
| print(" your-document-dataset \\") | |
| print(" your-markdown-output") | |
| print("\n" + "=" * 80) | |
| print("\nFor full help, run: uv run deepseek-ocr-vllm.py --help") | |
| sys.exit(0) | |
| parser = argparse.ArgumentParser( | |
| description="OCR images to markdown using DeepSeek-OCR (vLLM)", | |
| formatter_class=argparse.RawDescriptionHelpFormatter, | |
| epilog=""" | |
| Prompt Modes: | |
| document Convert document to markdown with grounding (default) | |
| image OCR any image with grounding | |
| free Free OCR without layout preservation | |
| figure Parse figures from documents | |
| describe Generate detailed image descriptions | |
| Examples: | |
| # Basic usage | |
| uv run deepseek-ocr-vllm.py my-images-dataset ocr-results | |
| # Parse figures from a document dataset | |
| uv run deepseek-ocr-vllm.py scientific-papers figures --prompt-mode figure | |
| # Free OCR without layout | |
| uv run deepseek-ocr-vllm.py images text --prompt-mode free | |
| # Custom prompt for specific task | |
| uv run deepseek-ocr-vllm.py dataset output --prompt "<image>\\nExtract all table data." | |
| # With custom batch size for performance tuning | |
| uv run deepseek-ocr-vllm.py dataset output --batch-size 16 --max-model-len 16384 | |
| # Running on HF Jobs | |
| hf jobs uv run \\ | |
| https://huggingface.co/datasets/uv-scripts/ocr/raw/main/deepseek-ocr-vllm.py \\ | |
| my-dataset my-output --max-samples 10 | |
| """, | |
| ) | |
| parser.add_argument("input_dataset", help="Input dataset ID from Hugging Face Hub") | |
| parser.add_argument("output_dataset", help="Output dataset ID for Hugging Face Hub") | |
| parser.add_argument( | |
| "--image-column", | |
| default="image", | |
| help="Column containing images (default: image)", | |
| ) | |
| parser.add_argument( | |
| "--batch-size", | |
| type=int, | |
| default=8, | |
| help="Batch size for processing (default: 8, adjust based on GPU memory)", | |
| ) | |
| parser.add_argument( | |
| "--model", | |
| default="deepseek-ai/DeepSeek-OCR", | |
| help="Model to use (default: deepseek-ai/DeepSeek-OCR)", | |
| ) | |
| parser.add_argument( | |
| "--max-model-len", | |
| type=int, | |
| default=8192, | |
| help="Maximum model context length (default: 8192)", | |
| ) | |
| parser.add_argument( | |
| "--max-tokens", | |
| type=int, | |
| default=8192, | |
| help="Maximum tokens to generate (default: 8192)", | |
| ) | |
| parser.add_argument( | |
| "--gpu-memory-utilization", | |
| type=float, | |
| default=0.8, | |
| help="GPU memory utilization (default: 0.8)", | |
| ) | |
| parser.add_argument( | |
| "--prompt-mode", | |
| default="document", | |
| choices=list(PROMPT_MODES.keys()), | |
| help="Prompt mode preset (default: document). Use --prompt for custom prompts.", | |
| ) | |
| parser.add_argument( | |
| "--prompt", | |
| help="Custom OCR prompt (overrides --prompt-mode)", | |
| ) | |
| parser.add_argument("--hf-token", help="Hugging Face API token") | |
| parser.add_argument( | |
| "--split", default="train", help="Dataset split to use (default: train)" | |
| ) | |
| parser.add_argument( | |
| "--max-samples", | |
| type=int, | |
| help="Maximum number of samples to process (for testing)", | |
| ) | |
| parser.add_argument( | |
| "--private", action="store_true", help="Make output dataset private" | |
| ) | |
| parser.add_argument( | |
| "--config", | |
| help="Config/subset name when pushing to Hub (for benchmarking multiple models in one repo)", | |
| ) | |
| parser.add_argument( | |
| "--create-pr", | |
| action="store_true", | |
| help="Create a pull request instead of pushing directly (for parallel benchmarking)", | |
| ) | |
| parser.add_argument( | |
| "--shuffle", | |
| action="store_true", | |
| help="Shuffle the dataset before processing (useful for random sampling)", | |
| ) | |
| parser.add_argument( | |
| "--seed", | |
| type=int, | |
| default=42, | |
| help="Random seed for shuffling (default: 42)", | |
| ) | |
| parser.add_argument( | |
| "--output-column", | |
| default="markdown", | |
| help="Column name for the OCR output text (default: markdown)", | |
| ) | |
| parser.add_argument( | |
| "--overwrite", | |
| action="store_true", | |
| help="Replace the output column if it already exists in the input dataset " | |
| "(default: error out to avoid clobbering an existing column).", | |
| ) | |
| parser.add_argument( | |
| "--verbose", | |
| action="store_true", | |
| help="Log resolved package versions after processing (useful for pinning deps)", | |
| ) | |
| args = parser.parse_args() | |
| main( | |
| input_dataset=args.input_dataset, | |
| output_dataset=args.output_dataset, | |
| image_column=args.image_column, | |
| batch_size=args.batch_size, | |
| model=args.model, | |
| max_model_len=args.max_model_len, | |
| max_tokens=args.max_tokens, | |
| gpu_memory_utilization=args.gpu_memory_utilization, | |
| prompt_mode=args.prompt_mode, | |
| prompt=args.prompt, | |
| hf_token=args.hf_token, | |
| split=args.split, | |
| max_samples=args.max_samples, | |
| private=args.private, | |
| shuffle=args.shuffle, | |
| seed=args.seed, | |
| output_column=args.output_column, | |
| overwrite=args.overwrite, | |
| config=args.config, | |
| create_pr=args.create_pr, | |
| verbose=args.verbose, | |
| ) | |